barSeed - Barley Seed Development Database

Probe CUST_32954_PI390587928

Source Contig U35_16391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32954_PI390587928	Hv_44K_v2	TTAAATTAGTTAGGACTTGCCAGTAGTTTTTCTACCTGCATTACCAGCTTCTGTAACATG	1210	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65057.19	1783	7e-23	1644 - 1704	98	60 / 61	plus	ABC05435
MLOC	MLOC_65057.18	1642	7e-23	1508 - 1568	98	60 / 61	plus	ABC05435
MLOC	MLOC_65057.10	3635	7e-23	3515 - 3575	98	60 / 61	plus	ABC05435
JLOC1	JLOC1_42781.3	1777	4e-23	1562 - 1622	98	60 / 61	plus
JLOC1	JLOC1_42781.2	1751	4e-23	1536 - 1596	98	60 / 61	plus
JLOC1	JLOC1_42781.1	2007	4e-23	1792 - 1852	98	60 / 61	plus
Harvest21	ABC05435	1409	3e-25	1238 - 1297	100	60 / 60	plus	ABC05435
Harvest35	U35_16391	1369	3e-25	1211 - 1270	100	60 / 60	plus
Harvest35	U35_16393	878	1e-23	728 - 788	98	60 / 61	plus
Harvest35	U35_16392	1199	1e-23	1049 - 1109	98	60 / 61	plus

Contig Sequence (1369 bp)

>U35_16391 1369 Hv_44K_v2
GTCGGCCCCGAGATCCCTCAGCTAAAAAAATTGTGTGGGGAAGAAGTCGCAAATGCAATT
AGTGCTATGACGATGGGGCTTTCTTCAGGTGGCATTGTTTCCTCTCAGGAGGCCCAAGAG
CTTTTTCGTTTTGCGACCCCTCCTCTGAGAGAAGATGACAAGGATGGGCACTATGTTTTT
GCTGTGGGAGACAACCTCACATCTCGCTATAGGATTAATGCAAAAATGGGTGAAGGTCAG
TTCGGACAGCAGCCTTTACATCTGTTGATATATTGGAATTCTCAAGGCGTTTCTTGCACA
CTGCTCTTGTTGACGTCGGCAGGATATGCTCATAATTGATTGTGTTTGCAAATAGATCAG
GTACCTTTGGTCAGGTGTTGGAATGTTGGGACAGGGAACGGAAAGAAATGGTGGCTATTA
AGATCATCAGAGGCATTAAGAAGTACAGGGATGCTGCAATGATAGAAATTGGCATGCTCG
AGCAGCTTTGTAAATATGAAAAGAGCAGATCCAGGTTTCATCCCGTTCACCAAAGGAGGG
ATCCTACTACAAACGTGTGCCCAAGTCCAGTTCAATAAAGGTTATTGATTTTGGCAGCAC
AACATATGACCAGCAGGACCAGACCTATGTAGTTTCTACTAGGCATTATCGGGCCCCGGA
AGTTATCCTGGGACTTGGATGGAGTTACCCATGTGATATCTGGAGCGTTGGTTGTATACT
AGTTGAACTCTGCACGGGAGAGGCGCTGTTTCAAACCCATGAAAATTTGGAGCATCTTGC
TATGATGGAGAGGGTGCTCGGGCCGTTGCCATATCACATGCTCAAAAAGGCCGATCGACA
TGGTGAGAAATATGTGAGAAAGGGCCGTTTAAACTGGCCTGAAGGATGTGCTTCACGGGA
AAGCATGAAAGCTGTTATGAAGCTGCCCCGGCTTCAGAATCTTGTGATGCAAAACATAGA
ACATTCTGCTGGGGACTTCATCAATCTTCTCCAAGGGCTGCTGAGCTATGATCCAGCAAG
CCGCCTAACGGCCCAAGAGGCCCTTGAGCATCCATTCTTGATGGAGCGGAGTGAGCGACG
AAGATGACGTGCTTGAGATCCTAGCATCTGCTATGTTTCTTGACTTGTCTTGTATGTTTA
AGCTGTGGCTTCCATTTGTCATGGAATGAAGAGATATTCTGTTCTCTCTTCCATGGAATG
GGAGTGCTAATTAAATTAGTTAGGACTTGCCAGTAGTTTTTCTACCTGCATTACCAGCTT
CTGTAACATGCTCGTTATTTGTACATATGTTGACTGATGTGTATGTAATCGGGATGAGAT
TCTCAATGAATATATTTTGATAGCAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27520.1	424	1e-115	protein\|serine/threonine-protein kinase AFC2, putative, expressed
Brachypodium v1_2	Bradi3g47730.2	430	5e-116
Arabidopsis v10	AT4G24740.1	427	1e-97	\| Symbols: AFC2, AME1, FC2 \| FUS3-complementing gene 2 \| chr4:12754729-12757653 REVERSE LENGTH=427