barSeed - Barley Seed Development Database

Probe CUST_32951_PI390587928

Source Contig U35_16392

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32951_PI390587928	Hv_44K_v2	CTCGTTATTTGTACATATGTTGACTGATGTGTATGTAATCGGGATGAGATTCTCAATGAA	1109	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65057.19	1783	2e-24	1705 - 1764	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.18	1642	2e-24	1569 - 1628	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.10	3635	2e-24	3576 - 3635	100	60 / 60	plus	ABC05435
JLOC1	JLOC1_42781.3	1777	8e-25	1623 - 1682	100	60 / 60	plus
JLOC1	JLOC1_42781.2	1751	8e-25	1597 - 1656	100	60 / 60	plus
JLOC1	JLOC1_42781.1	2007	8e-25	1853 - 1912	100	60 / 60	plus
Harvest21	ABC05435	1409	3e-25	1298 - 1357	100	60 / 60	plus	ABC05435
Harvest35	U35_16392	1199	3e-25	1110 - 1169	100	60 / 60	plus
Harvest35	U35_16391	1369	3e-25	1271 - 1330	100	60 / 60	plus
Harvest35	U35_16393	878	6e-22	789 - 848	97	58 / 60	plus

Contig Sequence (1199 bp)

>U35_16392 1199 Hv_44K_v2
GATCCCGTTCACCAAGGAGGGATCCTACTACAAACGTGTGCCCAAGTCCAGTTCAATAAA
GGTTATTGATTTTGGCAGCACAACATATGACCAGCAGGACCAGACCTATGTAGTTTCTAC
TAGGCATTATCGGGCCCCGGAAGTTATCCTGGGTATCTTTCTTGTCCAGTGCAAAGGCTC
TTCCCTTCAGCCAAATTTTGCGGTTGTAAGTTAATTTATATTTGCCATGGTGGATGTTGT
TTAGGACTTGGATGGAGTTACCCATGTGATATCTGGAGCGTTGGTTGTATACTAGTTGAA
CTCTGCACGGTACGTCATTGGGGCTTACTCTCATCTGCTATCAAAATCACAAGGACAGAG
TTTTTGAGTTACCAGAGGTACTGCAGGGAGAGGCGCTGTTTCAAACCCATGAAAATTTGG
AGCATCTTGCTATGATGGAGAGGGTGCTCGGGCCGTTGCCATATCACATGCTCAAAAAGG
CCGAGTATGTTGCTGTTCTTGATCCATACCAGTGTCTCAAGCTTTCAGCCATGAGAGAGG
ATTATTCAAACTATGTATTTTNGTTGTTGTTCCTTTTGTGTAGTCGACATGGTGAGAAAT
ATGTGAGAAAGGGCCGTTTAAACTGGCCTGAAGGATGTGCTTCACGGGAAAGCATGAAAG
CTGTTATGAAGCTGCCCCGGCTTCAGGTATTATCCATATCCTGTTGTTCCAGTTCAAATT
GATATCATTTTTAGATTTGTTTGGCTTATGATTTGGACTTATTTTATGCAAGCAGAATCT
TGTGATGCAAAACATAGAACATTCTGCTGGGGACTTCATCAATCTTCTCCAAGGGCTGCT
GAGCTATGATCCAGCAAGCCGCCTAACGGCCCAAGAGGCCCTTGAGCATCCATTCTTGAT
GGAGCGGAGTGAGCGACGAAGATGACGTGCTTGAGATCCTAGCATCTGCTATGTTTCTTG
ACTTGTCTTGTATGTTTAAGCTGTGGCTTCCATTTGTCATGGAATGAAGAGATATTCTGT
TCTCTCTTCCATGGAATGGGAGTGCTAATTAAATTAGTTAGGACTTTGCCAGTAGTTTTT
CTACCTGCATTACCAGCTTCTGTAACATGCTCGTTATTTGTACATATGTTGACTGATGTG
TATGTAATCGGGATGAGATTCTCAATGAATATTTTTGATAGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_16392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi3g47730.1	462	6e-83
Arabidopsis v10	AT4G24740.1	427	1e-64	\| Symbols: AFC2, AME1, FC2 \| FUS3-complementing gene 2 \| chr4:12754729-12757653 REVERSE LENGTH=427