barSeed - Barley Seed Development Database

Probe CUST_3294_PI390587928

Source Contig U35_4147

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3294_PI390587928	Hv_44K_v2	GCCTGAGACATGTTGCTTAGCTTAAAGTGTGGATTTTAATCTCTAGTTCTAGAAATGTAT	1544	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.408	1.645	1.403	0.930	0.371	0.372
Raw	5742.873	10288.547	7671.003	8085.320	1110.429	1221.325

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10468	1528	3e-25	1438 - 1497	100	60 / 60	plus	ABC10468
Harvest35	U35_4147	1635	3e-25	1545 - 1604	100	60 / 60	plus

Contig Sequence (1635 bp)

>U35_4147 1635 Hv_44K_v2
CAAGAGTTCTTTGATTTGAGGTTCAAATTCTATGTCAACCGGAAGAAAGTAATGATGGAA
AACATGGGGAATGAGTTGCTGAAGTATCAGAACAGAGTTAGGTTTATTCTTGCTGTTATT
TCCGAGGACATCATAGTCAATAACAGGAAGAGGGCAGACCTATTCCTGGAGCTGAAGCAG
AAGAACTATACACCTTTCCCAAAGAAAAAACCCACGTCTGGGCCAGTTGCTGTAGGATCT
ACAGAAGCAGAGGAAGATAATGATCAGAGTCCTGCTGAAGCTGCAGCAAGTGATTATGAG
TATCTTCTTGCAATGTCGATTGGTACCTTGACTTTGGAGAAGGTGAACGAGCTCATTGCG
CAGCAGGATAAGTTAAAGGCTGATCTTGAAATGCTGCGTAATACAGAGCCACAAACTCTT
TGGCTGAGAGACCTTGACGCTCTTGAGAAGGAACTGGATGTGTGTGATGCAAAACTTGAA
GCTGAGCAGCAGAACAGATCAAGCAAGCGCGCTAAAAATTCTGAAAAGGCGAAGGATTCT
AAGGCAGCACCCAAGAGGGCAGTGGCAGCTAAGAAGGCGAAGGCGAATTCGGCTGGGAGT
GATGATGATGATTATGAAGCAGCAATTCCGAAACGTGCAGCACAAAAGAAGAAACCACCA
CCCAAAAAGGCAAGTGCACCGGTGAAAGATGAAGAGGAGGAAGTGGCTGATCTGAAAGAC
CGCCTGGCTGCTTACAATATTAATGACTCCTCTCCAGAACCCAGTGCCATGGAAACAGAA
GAACAGCAGAAAGGAAAGAAAGGGGGGAACGGACCAAGCAAAAGAGGTGCAGCAAAGAAG
GCCATGTCATCCTTAGCTGAGATTTCTGATGAAGACATAGCAGAGCCCCAGCATGAGAGC
GAGGATGAGGGGTCTTCCATGGAAGTTGAGAAGAAGACTAAAGGAAAACAGCCTGCTGCT
GCGAAGCCAAAGACTGCTGCCATCAGGAAGAGAGCGCCAGCTCAGAGCAAAGGCATGAGA
CAGAAAGTGATGGAAGAAATATTCAAGCCTACTGATGACAGCAACCTCAGTGCTCCTTCT
CCTGAGAAGAAGGTGCGAAGGATCAGGGACTCCCCCTTCAACAAGAAGAGCGGCTCGGTT
CTGCACAGAATGGCGAGCACTTCAACAGGGGTAGAAGATGATGAGGCTCCTCCCTCCGGC
AGCTCTGCTGAGCCAGTTGCACCTAGAAGGACAACAAGGGAGAGGAAGGCGGCGGTAGTC
TACGTCGCTTCCGGGAGTGAAGATGATGAGTCTGAGGATGAAGATGTGTCGGAACCAAGT
GACGATGATGACTTCTCTGAAGATGACTAGACTCCTTGGCTCAACCGCTCAAACATTGCA
GTGGCTAGTGTCTAGAGACATTTGGTTGGCTAATCTGATGTATTGGTGCTTTGCTCAGGT
GCATCTCTTGTGCGTCGTATGTTATGTTTGGTTGCTGAGACATTCTGTGAGCTAATCGGT
TTGAGACTTGTGCCTATCACCATCTCTAGTTCTGTTTTATTCATGCCTGAGACATGTTGC
TTAGCTTAAAGTGTGGATTTTAATCTCTAGTTCTAGAAATGTATTTCTGTATTCTGTTCA
TATGCTTTGATGTGC

Homology of Contig U35_4147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47150.1	1526	1e-51	protein\|DNA topoisomerase 2, putative, expressed
Brachypodium v1_2	Bradi3g52470.2	1491	5e-112
Arabidopsis v10	None