barSeed - Barley Seed Development Database

Probe CUST_32949_PI390587928

Source Contig U35_16393

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32949_PI390587928	Hv_44K_v2	CTTCTGTAACATGCTCGTTATTTGTACATATGTTGACTGATGTGTATGTAATCGGGATAA	775	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65057.19	1783	2e-23	1692 - 1749	100	58 / 58	plus	ABC05435
MLOC	MLOC_65057.18	1642	2e-23	1556 - 1613	100	58 / 58	plus	ABC05435
MLOC	MLOC_65057.10	3635	2e-23	3563 - 3620	100	58 / 58	plus	ABC05435
JLOC1	JLOC1_42781.3	1777	1e-23	1610 - 1667	100	58 / 58	plus
JLOC1	JLOC1_42781.2	1751	1e-23	1584 - 1641	100	58 / 58	plus
JLOC1	JLOC1_42781.1	2007	1e-23	1840 - 1897	100	58 / 58	plus
Harvest21	ABC05435	1409	4e-24	1285 - 1342	100	58 / 58	plus	ABC05435
Harvest35	U35_16393	878	3e-25	776 - 835	100	60 / 60	plus
Harvest35	U35_16392	1199	4e-24	1097 - 1154	100	58 / 58	plus
Harvest35	U35_16391	1369	4e-24	1258 - 1315	100	58 / 58	plus

Contig Sequence (878 bp)

>U35_16393 878 Hv_44K_v2
CCAAGTCCAGTTCAATAAAGGTTATTGATTTTGGCAGCACAACATATGACCAGCAGGACC
AGACCTATGTAGTTTCTACTAGGCATTATCGGGCCCCGGAAGTTATCCTGGGACTTGGAT
GGAGTTACCCATGTGATATCTGGAGCGTTGGTTGTATACTAGTTGAACTCTGCACGGTAC
GTCATTGGGGCTTACTCTCATCTGCTATCAAAATCACAAGGACAGAGTTTTTGAGTTACC
AGAGGTACTGCAGGGAGAGGCGCTGTTTCAAACCCATGAAAATTTGGAGCATCTTGCTAT
GATGGAGAGGGTGCTCGGGCCGTTGCCATATCACATGCTCAAAAAGGCCGATCGACATGG
TGAGAAATATGTGAGAAAGGGCCGTTTAAACTGGCCTGAAGGATGTGCTTCACGGGAAAG
CATGAAAGCTGTTATGAAGCTGCCCCGGCTTCAGAATCTTGTGATGCAAAACATAGAACA
TTCTGCTGGGGACTTCATCAATCTTCTCCAAGGGCTGCTGAGCTATGATCCAGCAAGCCG
CCTAACGGCCCAAGAGGCCCTTGAGCATCCATTCTTGATGGAGCGGAGTGAGCGACGAAG
ATGACGTGCTTGAGATCCTAGCATCTGCTATGTTTCTTGACTTGTCTTGTATGTTTAAGC
TGTGGCTTCCATTTGTCATGGAATGAAGAGATATTCTGTTCTCTCTTCCATGGAATGGGA
GTGCTAATTAAATTAGTTAGGACTTTGCCAGTAGTTTTTCTACCTGCATTACCAGCTTCT
GTAACATGCTCGTTATTTGTACATATGTTGACTGATGTGTATGTAATCGGGATAAAATTC
TCAATGAATATATTTTATAGCAAAACAAAAAAAAAAAA

Homology of Contig U35_16393 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27520.1	424	1e-83	protein\|serine/threonine-protein kinase AFC2, putative, expressed
Brachypodium v1_2	Bradi3g47730.2	430	9e-83
Arabidopsis v10	AT4G24740.1	427	9e-75	\| Symbols: AFC2, AME1, FC2 \| FUS3-complementing gene 2 \| chr4:12754729-12757653 REVERSE LENGTH=427