barSeed - Barley Seed Development Database

Probe CUST_32925_PI390587928

Source Contig U35_25110

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32925_PI390587928	Hv_44K_v2	AGATGAGCGACACGTACTGCCCGGACTGCAAGAAGCACACGGAGGTGGCCTTCGACCACT	134	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.716	0.798	2.335	2.735	1.394	1.254
Raw	73.065	111.272	323.854	585.594	113.731	105.598

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10647.1	1383	2e-24	88 - 147	100	60 / 60	plus	ABC07364
JLOC1	JLOC1_6982.1	1437	8e-25	85 - 144	100	60 / 60	plus
Harvest21	ABC22281	425	3e-25	135 - 194	100	60 / 60	plus
Harvest35	U35_25110	425	3e-25	135 - 194	100	60 / 60	plus

Contig Sequence (425 bp)

>U35_25110 425 Hv_44K_v2
CTCCTCCCCCCAACCAAATCGCCTCCCCCTCCCCGTCCCCGTCCCCCTCTCCCCCGCACG
CCACCCCACACCACCACCGCCGGCGAGGAGCGCGGCGCGGCAGGGCGGGAGGGGGGCGGC
GCGGGCGGCCGAGAAGATGAGCGACACGTACTGCCCGGACTGCAAGAAGCACACGGAGGT
GGCCTTCGACCACTCGGCGGGGGACACGGTGTGCACCGAGTGCGGCCTCGTCCTCGAGGC
GCACTCCGTCGACGAGACCTCCGAGTGGCGGACCTTCGCCAACGAGTCCAACGACAACGA
CCCCGTCCGTGTCGGCGGGCCCTCCAACCCGCTCCTCACCGACGGGGGCCTCTCCACCGT
CATCGCCAAGCCCAACGGCGCCCACGGCGACTTCCTCTCCTCCTCCCTCGGCCGCTGGCA
GAACC

Homology of Contig U35_25110 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36440.1	313	5e-62	protein\|transcription initiation factor IIB, putative, expressed
Brachypodium v1_2	Bradi4g36290.2	258	5e-66
Arabidopsis v10	AT3G10330.1	312	4e-57	Cyclin-like family protein \| chr3:3199907-3201642 FORWARD LENGTH=312