barSeed - Barley Seed Development Database

Probe CUST_32923_PI390587928

Source Contig U35_25112

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32923_PI390587928	Hv_44K_v2	CAGCGTTTTTGACACTATACTAGTATCAAAATCGTTTTTGTATTATGGGATGGAGGAATG	432	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.195	1.183	1.052	0.910	0.248	0.329
Raw	43.765	70.881	53.014	74.437	6.612	9.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43138.1	1578	7e-23	67 - 123	100	57 / 57	minus	None
MLOC	MLOC_43138.2	1196	7e-23	59 - 115	100	57 / 57	minus	None
JLOC1	JLOC1_27868.3	1296	4e-23	1189 - 1245	100	57 / 57	plus
JLOC1	JLOC1_27868.2	1050	4e-23	943 - 999	100	57 / 57	plus
JLOC1	JLOC1_27868.1	1129	4e-23	1022 - 1078	100	57 / 57	plus
Harvest21	ABC50729	511	3e-25	20 - 79	100	60 / 60	minus
Harvest35	U35_25112	511	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_25112 511 Hv_44K_v2
TACCCAGCCACCGTCAACGACGAAGGGATGTACGATCATGCCAGATCAGTGGCAGAGGCT
ATGCTTGGAGAAGGCCACGTCAAGACAGGTGGCCCAATGATGGCCGCGGAGGATTTCTCG
TTCTACACGCAGAGATTCCCAGGGGCATTTTTCATGATAGGAACCCGCGACGAGGCCATG
GCAACCGCGGTGCATCCACTCCACTCCCCCAACTTTGTGATCGATGAGGGTGTGCTCCCG
GTGGGAGCTGCCTTCCATGCTGCTGTGGCGATGGAGTACTTGAACAAGCACGGAACCGTG
GCAAAATAGATTACTGATGTCCGTTCGAAATTTAGGATGTTGCAGTGGGCAGCCTGCCGA
TTACTGTTACTAGGATGGGTGTGTGCATTCATAGGTACTGAGTCGTAACACTCCCTCCGT
CCCATAATGTAACAGCGTTTTTGACACTATACTAGTATCAAAATCGTTTTTGTATTATGG
GATGGAGGAATGTAGTTGTTATGATGTGATT

Homology of Contig U35_25112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None