barSeed - Barley Seed Development Database

Probe CUST_32921_PI390587928

Source Contig U35_25114

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32921_PI390587928	Hv_44K_v2	AGCGCGGCAAGGGCGACCTCGAGGACGACGACGAGGACAGGAGCAGCACAGCAGCAGCGA	440	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368120	1208	7e-23	448 - 508	98	60 / 61	plus	ABC15595
Harvest35	U35_25114	500	3e-25	441 - 500	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_25114 500 Hv_44K_v2
AGCACACATCTCATCTCCCAGTCGCACTCATCCACTCGCCGCTCGTTCCCCAACCAGCAG
CAACAAGCAACCATCTTCTCTTCTCTTCTCTCCGTCCCTCGCGACGACGACCGGCGGCGG
CATGCAGTCGGGCTCGGCGAGCTCTGGTGCGGCGCCGTTCGTGGCCAAGACGTACGGGAT
GGTGGACGACCGTGCCACCGACGCCGTCGTCGCCTGGGGCCCCGCCGGGAACAGCTTCGT
CGTCGCCGACCCATTCGCCTTCTCGCGCGCGCTCCTCCCGGCCCACTTCAAGCACGCCAA
CTTCTCCAGCTTCGTCCGGCAGCTCAACACGTACGGCTTCCGCAAGGTCGACCCGGACCG
CTGGGAGTTCGCGCACGCCTCCTTCCTCCGCGGCCAGACGCACCTCCTCCGCCACATCGT
GCGGCGCCAGAGCAGCGGCAAGCGCGGCAAGGGCGACCTCGAGGACGACGACGAGGACAG
GAGCAGCACAGCAGCAGCGA

Homology of Contig U35_25114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g13800.1	299	4e-52	protein\|HSF-type DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g08870.1	315	8e-52
Arabidopsis v10	None