- Probe CUST_32914_PI390587928
- Source Contig U35_13141
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32914_PI390587928 | Hv_44K_v2 | AGCGCGCACCGAGATCTCGTCCTTCCAGTCACTGTGCGCGCAGATATGGATCTCGACGAC | 87 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.719 | 1.161 | 2.345 | 1.882 | 0.698 | 0.341 |
| Raw | 18.801 | 46.802 | 81.943 | 101.077 | 13.867 | 7.214 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362753 | 1985 | 2e-24 | 966 - 1025 | 100 | 60 / 60 | plus | ABC09863 |
| MLOC | MLOC_79344.1 | 254 | 2e-24 | 167 - 226 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_52856.1 | 254 | 8e-25 | 166 - 225 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC21672 | 375 | 3e-25 | 88 - 147 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13141 | 375 | 3e-25 | 88 - 147 | 100 | 60 / 60 | plus |
Contig Sequence (375 bp)
>U35_13141 375 Hv_44K_v2 GCTGAAGGCGATAGCCAACCGTCGGTCCAGCGCCGGTCAAGACGCCGAGGTTTACGGCAA GATGGCGCATGACCCCAAGAACCAGGAAGCGCGCACCGAGATCTCGTCCTTCCAGTCACT GTGCGCGCAGATATGGATCTCGACGACGCGCGCGCGGAAGCAGCTCGACGCCGACGCGAC GACGACGCTTCGCCTGGCGGTGAACTGCCGTCACAGGCTGCGCCCGGCGGTCTCCCCTGC CTACTTCGGCAACGCCATCCAGAGCGCGCCCACGACGGCGACGGTGGCGGAGCTGGCGTC CAACGACCTGCGGTGGGCGGCGTCCAGGCTGAACGCGAGCCTGGCGGCGTACGGCGACGA AGCGATACGCGGCGC
Homology of Contig U35_13141 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g63480.1 | 484 | 3e-60 | protein|transferase family protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g55250.1 | 498 | 3e-62 | |
| Arabidopsis v10 | None |