barSeed - Barley Seed Development Database

Probe CUST_32911_PI390587928

Source Contig U35_13144

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32911_PI390587928	Hv_44K_v2	TTCCTTGGCTTTTTGTATTCACCTCATCTTGATACAGCGCCTCCTAGATGGGTCCATCTT	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369231	1751	7e-23	424 - 483	98	59 / 60	plus	ABC16447
MLOC	MLOC_19179.7	1617	7e-23	1286 - 1345	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.8	1467	7e-23	1286 - 1345	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.6	1777	7e-23	1324 - 1383	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.1	1518	7e-23	1306 - 1365	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.10	1211	7e-23	786 - 845	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.5	2181	7e-23	1245 - 1304	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.3	1821	7e-23	1710 - 1769	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.2	1405	7e-23	1305 - 1364	98	59 / 60	minus	ABC16447
MLOC	MLOC_19179.9	1632	7e-23	1201 - 1260	98	59 / 60	minus	ABC16447
JLOC1	JLOC1_13304.2	1866	4e-23	392 - 451	98	59 / 60	plus
JLOC1	JLOC1_13304.1	1572	4e-23	98 - 157	98	59 / 60	plus
Harvest21	ABC22432	447	3e-25	339 - 398	100	60 / 60	plus
Harvest35	U35_13144	447	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_13144 447 Hv_44K_v2
CCACAACGGGACAGATCCCCCCCGCATAAATTCCTCCGCCAATCCCCCCCACGCGCGCGC
GCACGCCGCCTTCCCGCCACTCCGCTCCCCCATTCGCTCCCTCCGTCCGCCGGCCGGGGA
CTCGGATTTGGGGGCGGGGCGGGGAGGAGGAGATGGGGTACGTCGGGAGCCACGGCGTCG
CGACGCTGCGCAAGTACAAGTACAGCGGCGTCGACCACTCCGTCGTCGCCAAGTACATCC
TCCAGCCCTTCTGGTCGCGATTCGTCAACGTCTTCCCCCTCTGGTTCCCGCCAAACATGA
TCACGCTGACAGGTTTCATGTTTCTGCTGACGTCAGCATTCCTTGGCTTTTTGTATTCAC
CTCATCTTGATACAGCGCCTCCTAGATGGGTCCATCTTGCGCATGGAATACTTCTCTTCC
TTTACCAGACTTTTGATGCTGTGGATG

Homology of Contig U35_13144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02750.3	326	4e-60	protein\|CDP-alcohol phosphatidyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g01810.1	390	8e-64
Arabidopsis v10	AT3G25585.2	389	2e-54	\| Symbols: AAPT2, ATAAPT2 \| aminoalcoholphosphotransferase \| chr3:9295856-9298271 FORWARD LENGTH=389