barSeed - Barley Seed Development Database

Probe CUST_32909_PI390587928

Source Contig U35_13146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32909_PI390587928	Hv_44K_v2	GCAAAGGTGAGAATTGTGTATAGATATTAGAGACATCTCATCCGTGTAAATCTCATTGTT	980	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.282	1.649	1.489	0.837	0.290	0.167
Raw	118.366	141.267	103.915	93.345	11.181	5.967

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376048	1923	2e-24	1791 - 1850	100	60 / 60	plus	None
MLOC	MLOC_40016.2	1649	2e-24	1202 - 1261	100	60 / 60	plus	None
JLOC1	JLOC1_26140.1	1393	8e-25	1157 - 1216	100	60 / 60	plus
Harvest21	ABC25930	1080	3e-25	981 - 1040	100	60 / 60	plus
Harvest35	U35_13146	1080	3e-25	981 - 1040	100	60 / 60	plus

Contig Sequence (1080 bp)

>U35_13146 1080 Hv_44K_v2
GGGGACCTCAGCGCGGCGCGGGTGCGGGAGTGGATGGCGTACCACGCGCGCTTCTTCGGC
GCGCGCTCGCACTTCGTGTTCCACGACGCCGGCGGCGTCGGCCCCGCGGTGCGCGCGGCG
CTCGAGCCATGGGTGCGCGCCGGCCGCGCCACGCTGCAGGACGTGCGCGCCCAGGCCGAC
TACGACGGCTGGTACCACAACCAGTTCCTCGTCGTCAACGACTGCCTCCACCGGTACCGG
CACGCAGCCAGGTGGACCTTCTTCTTCGACGTCGACGAGTACATCTTCCTGCCCGACGGC
CGGACGCTCGACGGCGTGCTCGCCGAGCTAGACCCCTACACGCAGTTCACCATCGAGCAG
AACCCAATGTCGAGCAGGTTGTGCGCGCGGGGCGCCAACGATTCCATGGCCGACTACTCC
AAACAATGGGGTTTTGAGAAGCTGGTGTTCCGGAATTCGATCACCGGGGTGAGGCGCGAC
AGGAAGTACGCGATCCAGGCCAAGAACGCATACGCCACGGGCGTACACATGTCCGAGAAC
GTGATCGGCAACACCACTCACAAGACGGAGCACCTCATCCGGTACTACCACTACCACAAT
ACCATCAATGTTCCCGGCGAGTTATGCCGCGAGATTGTGCCCGTGCCGCCCAAAGGTGGC
CTGACGTGGTCGGAGAAGACGCCCTGGTACTACGACGACAGCATGAAGCTCGTCGCAAAC
GCGGTGCGGGAGTTCGAGAAGCGAAACATTGGCAATGTGCGTGTGTGAATATGGCATGAC
AAAACATCAGAGAACGGACTGGTGTATAGCATTGCTGTTGGCCGTCCATGAAGCTTGGCA
GGGGTATCCCTCATGCTGTGAACCTAACAAACAAGTCATAGTTTGGAGCTTGTGAGCTGA
CAGAGACGCGATGAAAGCGAAGCCGCAACCCCAACGGCACGGCAGATTGTGTGCTACTGC
TGCAACCCTGGTGTTGATCTGCAAAGGTGAGAATTGTGTATAGATATTAGAGACATCTCA
TCCGTGTAAATCTCATTGTTAAAACTATTCTCAGTCATATTCATTGCATTCCATTCACTT

Homology of Contig U35_13146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g41910.1	523	3e-167	protein\|expressed protein
Brachypodium v1_2	Bradi1g35710.2	509	3e-170
Arabidopsis v10	AT2G33570.1	496	1e-119	Domain of unknown function (DUF23) \| chr2:14217361-14219043 FORWARD LENGTH=496