barSeed - Barley Seed Development Database

Probe CUST_32904_PI390587928

Source Contig U35_25123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32904_PI390587928	Hv_44K_v2	ATCCTCATACAATTCCTATGATTTCGAAGCCACACATGCTAGCGATGGATCGACCAGTCA	342	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70809.1	1520	2e-24	1048 - 1107	100	60 / 60	minus	ABC40958
MLOC	MLOC_70809.2	2538	2e-24	1044 - 1103	100	60 / 60	minus	ABC40958
MLOC	MLOC_70809.3	2416	2e-24	1044 - 1103	100	60 / 60	minus	ABC40958
JLOC1	JLOC1_47007.1	1830	8e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC21821	543	3e-25	343 - 402	100	60 / 60	plus
Harvest35	U35_25123	544	3e-25	343 - 402	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_25123 544 Hv_44K_v2
CTCGTTCTCGTTCTCGTTCCTCCTCTCCTCTCACATGTCTACTATCTACATGAGCCAGCT
ATCTACTCTCCCTCTAATGGATGGAGATCAAGATCAAGGGCACTTTCAAGCCTTTCATCT
ACCCAAGGACCCTCCTATCTTGTTCCCTTTCATGATCGACAACCCTGTGGATCATCAAGG
GCAAGGCTGTGGAGACCAGCACTCGGGGCAGCATCTTTTTGGTGAATCTAGTCAGCAGTT
CAATGATCGCATGATGATGGGCGGAGGATCTGCGGACGTCTTCGCCACATGTTCCCCGTT
CGGACCTACCATCCAAAGCATCGGCAGTGACATGATCCAGAGATCCTCATACAATTCCTA
TGATTTCGAAGCCACACATGCTAGCGATGGATCGACCAGTCAGTGGGCATCTGCCAAACC
GCCAGTGAAGATGAGGATCATGAGAAAGGCGCCAACGAATGATCCCCAAGGAGGGATGGT
GAGAAAGCCAAGGAGAAGGGCACAAGCACACCAAGCTGATGAGAGCCAGCAGCTGCAGCA
TGCC

Homology of Contig U35_25123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12790.1	354	1e-69	protein\|GATA zinc finger domain containing protein, expressed
Brachypodium v1_2	Bradi3g08240.3	347	5e-91
Arabidopsis v10	None