barSeed - Barley Seed Development Database

Probe CUST_32900_PI390587928

Source Contig U35_25127

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32900_PI390587928	Hv_44K_v2	AAGAAGAAGGCTTACATTCAAAATTTGGAGACGAGTAGGGTCAGGCTGTCACAGATGGAG	56	GeneList: mediumpurple3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.488	3.122	0.695	0.467	1.070	0.953
Raw	24.414	29.549	5.556	4.210	3.551	3.530

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58614.2	1845	2e-23	738 - 795	100	58 / 58	plus	ABC36667
MLOC	MLOC_58614.4	631	9e-22	29 - 86	98	57 / 58	minus	None
MLOC	MLOC_58614.3	1824	9e-22	1004 - 1061	98	57 / 58	minus	None
JLOC1	JLOC1_38097.3	3162	5e-22	815 - 872	98	57 / 58	plus
JLOC1	JLOC1_38097.2	2918	5e-22	571 - 628	98	57 / 58	plus
JLOC1	JLOC1_38097.1	3126	5e-22	779 - 836	98	57 / 58	plus
Harvest21	ABC21641	446	3e-25	57 - 116	100	60 / 60	plus
Harvest35	U35_25127	446	3e-25	57 - 116	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_25127 446 Hv_44K_v2
CCAAGACGCTGAGGAGGCTCGCGCAGAACAGGGAGGCCGCGAGGAAGAGCAGGCTTAAGA
AGAAGGCTTACATTCAAAATTTGGAGACGAGTAGGGTCAGGCTGTCACAGATGGAGCAGG
AGATGCAAAGATGCAGCGCTCAGGGTGCAATCTTGGGTGGTGGAGCTGGCATTGGAGGGC
TAAGCCCAGAGGCGGCATGGTTCGACGGGGAGTACGCGAGGTGGGTGGACGAGCACGACA
GGATGATGCGGCACTTGCGGGCAGCGGTGGACGCGGAGGGGGTGGAGCACGACGCGGCGG
CGGCGGACGGCGAGCAGCTGCTGCGGCAGCTTATCGACGCCGCGGCGGCGCACCATGTGG
TGCTGGCGGAGCTCAAGTCCGCCGTTGCCAGGGCCGACGTGTTCCACCTCGTCTCCGGGA
CGTGGCTGCCCGCCGCCGAGCGCTGC

Homology of Contig U35_25127 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10140.1	304	3e-53	protein\|bZIP transcription factor domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None