barSeed - Barley Seed Development Database

Probe CUST_32898_PI390587928

Source Contig U35_25129

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32898_PI390587928	Hv_44K_v2	TCCTGCTAGCCAGAGTTATCGATATACTGGTTTTGATATGGAGTGATTGGTGGAGCTGGT	155	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.682	0.822	1.703	2.151	1.174	0.839
Raw	3.097	6.795	17.162	29.683	5.896	3.151

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361858	1656	2e-24	447 - 506	100	60 / 60	plus	ABC11628
MLOC	AK365578	1995	2e-24	642 - 701	100	60 / 60	plus	ABC11628
MLOC	AK364841	1659	2e-24	226 - 285	100	60 / 60	plus	ABC11628
MLOC	MLOC_52353.1	1408	2e-24	958 - 1017	100	60 / 60	minus	None
MLOC	MLOC_52353.2	1102	2e-24	958 - 1017	100	60 / 60	minus	None
MLOC	MLOC_52353.3	1114	2e-24	937 - 996	100	60 / 60	minus	None
JLOC1	JLOC1_33540.1	1139	8e-25	117 - 176	100	60 / 60	plus
Harvest21	ABC25056	494	3e-25	156 - 215	100	60 / 60	plus
Harvest35	U35_25129	495	3e-25	156 - 215	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_25129 495 Hv_44K_v2
CCCTCCCCCGCCGCCGCGCATTTGCTGGTTCCGGCGACGGCCGCTTCTCTGCGCGTGCGT
GTGGCCGTGCCCTCGCCGTCCCTCCAAATCTCCGGCGAGCCGCCGCTCCGCCCGCGCCCC
AAGCCCGAGCCCGAGCCCGAGCCCGCTCTAGGTTTTCCTGCTAGCCAGAGTTATCGATAT
ACTGGTTTTGATATGGAGTGATTGGTGGAGCTGGTCGCCCGGAAGCTCTGCCGGTGAATC
CGATGGGGAGCAACGATCCTAGCACGCCGCCTAAGGCTTCCAAGCCACCAGAACAGGAGC
AACCTCCAGCTACTACCTCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCCGGCTTTC
AGGGCTACCCAGCGATGCCACCACATGGTTTTTTTCCCCCTCCTGTTGCTGCAGGCCAAG
CTCATCCATACATGTGGGGAGCTCAACACATGGTGCCACCTTACGGGACACCACCACCCC
CCTATATGATGTATC

Homology of Contig U35_25129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None