- Probe CUST_32895_PI390587928
- Source Contig U35_37104
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32895_PI390587928 | Hv_44K_v2 | GCTTTCCAAGTTAGAAAGCGTACTCTGGTTCTTCTATAGCTGGAATACATGTTCTTTTGC | 123 | GeneList: plum1 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.556 | 0.688 | 0.485 | 1.576 | 3.359 | 1.342 |
Raw | 3.122 | 7.228 | 4.602 | 28.459 | 22.035 | 10.157 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_70529.1 | 1158 | 2e-24 | 1081 - 1140 | 100 | 60 / 60 | plus | ABC32741 |
Harvest21 | ABC32741 | 202 | 3e-25 | 124 - 183 | 100 | 60 / 60 | plus | ABC32741 |
Harvest35 | U35_37104 | 202 | 3e-25 | 124 - 183 | 100 | 60 / 60 | plus |
Contig Sequence (202 bp)
>U35_37104 202 Hv_44K_v2 GCCCGTGGTCGCGAGGTGGAAGAAGGTGGGCGACAGAACATAGAGAATCAACACGGGGCC CGCCTATAAGTGAAACCGATGGTCGGCCCCGCAACTTTAGTTGAAACGTATTATCTAGAA TATGCTTTCCAAGTTAGAAAGCGTACTCTGGTTCTTCTATAGCTGGAATACATGTTCTTT TGCNNAAAAAAAAAAAAAAAAA
Homology of Contig U35_37104 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |