- Probe CUST_32894_PI390587928
- Source Contig U35_37105
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32894_PI390587928 | Hv_44K_v2 | ATGGCTGAAAGTGACGAGAACCGCTGAGCCTGACCACCTGGGCATACGCCTTACCAAAAG | 42 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.711 | 0.766 | 1.935 | 2.280 | 1.018 | 1.108 |
| Raw | 174.605 | 266.547 | 659.953 | 1207.676 | 198.861 | 230.476 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373297 | 2609 | 2e-24 | 1385 - 1444 | 100 | 60 / 60 | plus | ABC18757 |
| MLOC | AK376984 | 2959 | 2e-24 | 1813 - 1872 | 100 | 60 / 60 | plus | ABC18757 |
| MLOC | MLOC_63374.1 | 3066 | 2e-24 | 1128 - 1187 | 100 | 60 / 60 | minus | ABC18757 |
| JLOC1 | JLOC1_41501.1 | 2990 | 8e-25 | 1804 - 1863 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32742 | 271 | 3e-25 | 43 - 102 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37105 | 271 | 3e-25 | 43 - 102 | 100 | 60 / 60 | plus |
Contig Sequence (271 bp)
>U35_37105 271 Hv_44K_v2 GCAAGACCTTCCGAATGCCGAGGGCAAGGGACAGCTCAGGGAATGGCTGAAAGTGACGAG AACCGCTGAGCCTGACCACCTGGGCATACGCCTTACCAAAAGGCCCATGCTCCGCCCACA GCTCCCAACACGCTACAGGAAGATCGAGTCTCCGGTGGCCGTCGGTGTCGTCGTCGATGC GCGGATGCACGGCGGATGGTGGGAGGGGATCGTGCTGCAGCAGGAGACCGCTGGCCACGT CAAGGTTTATCTCCAAGGGGAGGGGAGGCTT
Homology of Contig U35_37105 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |