barSeed - Barley Seed Development Database

Probe CUST_32882_PI390587928

Source Contig U35_13159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32882_PI390587928	Hv_44K_v2	AAAGTACAGGCGTAATGAGCCTCCCTTGCAGCATATGTAGAACAGTTCGGACGTAAAAAA	543	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.408	0.828	0.821	1.594	0.986	1.217
Raw	32.241	99.592	90.148	262.935	57.866	78.812

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23616.1	813	9e-22	690 - 744	100	55 / 55	plus	ABC21687
JLOC1	JLOC1_16309.1	814	5e-22	687 - 741	100	55 / 55	plus
Harvest21	ABC21687	614	3e-25	544 - 603	100	60 / 60	plus	ABC21687
Harvest35	U35_13159	614	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_13159 614 Hv_44K_v2
GCACGAGGNAGTTCCCCTTCCGGGAGAACCACAACAGGGAGTACGGCGAGGTGTGGGGCT
TCTTCTTTGCAGCGCAGCACGCCGGGGAGACGTGCCCGCCGCCAGGCACGGGCAGGTACT
GGGTGCAGTACGGCGCCGAGAAGGTGTACTACGGCCAGACCGGCTGGGAGGCGGTGGCGT
TCCGGCGCAGGTTCGTGTACCGCTTCACGTGGAAGGGCGGGGAGGTATGGTCGCCGACGC
GCTGGCTGATGAAGGAATACCGGATCAACAGGGACTCGGCCGCCTTCCGCCATGCGTACC
TAGACCCTAAGGCACCGGACGTCGTCTTCATGGTGACCAAGGTCTACCGGAAGCCGGTGC
TCCCCCCGCCTGTCGACAGCAGCTCCAGCGAGGAGGAGGGCTCTGAGCGCTCCATCGTGC
TGAACAGGAGGCGCTAGCATTATGCAACTGCATGTTGATTTCTTCAGCGTTGTTGTGTCT
GTTTCTTATTTCATTTCAGTTCTGGATTGTGCGCTCGATCTAGTTGATTGTTCCGCTTTG
TTCAAAGTACAGGCGTAATGAGCCTCCCTTGCAGCATATGTAGAACAGTTCGGACGTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_13159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None