- Probe CUST_32881_PI390587928
- Source Contig U35_25130
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32881_PI390587928 | Hv_44K_v2 | TACGGCTTGATGGTGTGTGCCGAGAATCGTGATGCTGTTTGATTGCTTTGTAGTAAAAAA | 331 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.231 | 1.592 | 1.227 | 0.784 | 0.296 | 0.408 |
| Raw | 360.232 | 736.444 | 488.568 | 499.492 | 66.091 | 97.775 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK365312 | 2883 | 9e-22 | 2824 - 2878 | 100 | 55 / 55 | plus | ABC31285 |
| MLOC | MLOC_79063.1 | 2445 | 9e-22 | 164 - 218 | 100 | 55 / 55 | minus | ABC31285 |
| MLOC | MLOC_79063.2 | 2482 | 9e-22 | 114 - 168 | 100 | 55 / 55 | minus | ABC31285 |
| JLOC1 | JLOC1_52684.1 | 2411 | 5e-22 | 2228 - 2282 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC31285 | 397 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus | ABC31285 |
| Harvest35 | U35_25130 | 397 | 3e-25 | 332 - 391 | 100 | 60 / 60 | plus |
Contig Sequence (397 bp)
>U35_25130 397 Hv_44K_v2 GGACAAGGTGCTGGAGTACGAGCAGGGGGGGAAGGGCCTCCTGTGCGCGGACCTGATGGC CAGCGTCGCGGAGCAGGGGTTCGCGTGCGTCGAGGGCAGGACGTGCGCGTCGAGCATGGG CCGGCCGGCGTCGTACGGGAAGGCGGTGGCGTGGAAGGTGCTCGACGACGGCGGCGCCGG CGCCGCCCACTGCGTGTGCTTCGCGTTCATCGACTGGTCCTTCGTTTAGGCGAGGGACCG ATCGTTGTTGTTGTAGTCGCCGTTTGTTGCCAGGTCTCGGGCGTTGGTGATGGGCGCGGT GCAATGCTTGGACGATGATGGTGGTGTTTTGTACGGCTTGATGGTGTGTGCCGAGAATCG TGATGCTGTTTGATTGCTTTGTAGTAAAAAAAAAAAA
Homology of Contig U35_25130 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |