barSeed - Barley Seed Development Database

Probe CUST_32878_PI390587928

Source Contig U35_25135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32878_PI390587928	Hv_44K_v2	GGACATTTATGAAGGAAATATCACAGAAGATTTTGCAGACATGACGCTTTATAATGAGGA	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250477.1	2546	2e-24	883 - 942	100	60 / 60	plus	ABC13105 ABC13106
MLOC	MLOC_15076.2	1800	2e-24	1364 - 1423	100	60 / 60	minus	ABC13105 ABC13106
MLOC	MLOC_15076.1	1946	2e-24	1370 - 1429	100	60 / 60	minus	ABC13105 ABC13106
JLOC1	JLOC1_10323.1	2332	8e-25	559 - 618	100	60 / 60	plus
Harvest21	ABC25931	743	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_25135	743	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_25135 743 Hv_44K_v2
GACCTCGCGCCTCCCCCAGCAACCCAGATCTATCTCCTGTTTTTCTCCAGTATTTCAGCA
TGATTGAACTTGTCCCCAACAACGATGTGCTGGAGAAGTGTATTAAAGACATCCTCTCTC
AAATAAAACCGGCAGAGGATGATCTGAACAGAAGACTATCTGCAATTAAGGAGCTGGAAG
TTTCCATGCAACCAGTTGCAGCCTTGAAAGGTGCTGCTGCAAAACCTTTTGGATCCTTTC
TATCAAATCTTTACTCAAAATCAGGAGATTTGGATATATCAGTTCAGCTCATGAATGGCT
CAAACCTCCCTATAAACAAGAAAAAGAAGATAAGTACCTTGAAAGCAGTAAGGACAGCTT
TGCAAAAGGGAGGTGTTTATGGATATATGGAGTTCATTCCTCAAGCAAGAGTCCCAGTTC
TTCAGTACGTGAGCAACCGCTTTGGTATTTCCTGCGATTTATCCGTGGATAACTACCCTG
GTCGAATTAAATCCAAAATCTTCTACTGGATCAGTACTTTGGATGAACGTTTTGGTGATA
TGGTTTTATTGATCAAGGAGTGGGCAAAAGCTCAAAACATTAATGATCCAAAAAGTGGGA
CCCTGAACTCCTATTCGCTTTGCCTACTTGTTCTCTTTCATTTTCAGACATGTGAGCCGG
CAATCCTACCACCTTTGGAGGACATTTATGAAGGAAATATCACAGAAGATTTTGCAGACA
TGACGCTTTATAATGAGGAACAT

Homology of Contig U35_25135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62790.1	268	4e-114	protein\|expressed protein
Brachypodium v1_2	Bradi2g54817.1	612	4e-135
Arabidopsis v10	AT2G39740.1	511	1e-64	Nucleotidyltransferase family protein \| chr2:16576250-16578704 FORWARD LENGTH=511