barSeed - Barley Seed Development Database

Probe CUST_32877_PI390587928

Source Contig U35_25136

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32877_PI390587928	Hv_44K_v2	CCTGGAGAAGGATGGGTATTTGACTCAACTTCATGATATTATTATGATAAGTCTACTGGA	354	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.492	0.678	1.494	1.782	1.056	1.054
Raw	44.473	94.962	181.447	339.709	72.425	79.159

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62640.2	1335	7e-23	517 - 576	98	59 / 60	plus	ABC13128
JLOC1	JLOC1_41009.1	1395	4e-23	519 - 578	98	59 / 60	plus
Harvest21	ABC25784	420	3e-25	355 - 414	100	60 / 60	plus
Harvest21	ABC13128	1172	1e-23	380 - 439	98	59 / 60	plus	ABC13128
Harvest35	U35_25136	422	3e-25	355 - 414	100	60 / 60	plus
Harvest35	U35_4644	1264	1e-23	423 - 482	98	59 / 60	plus

Contig Sequence (422 bp)

>U35_25136 422 Hv_44K_v2
CCGACCCCACGCCGAAATCAAACCCCAACTCGTCCGCTCCGGTGATCCGCCGCCCCAGGA
GGCGAAGCCCCACGACGCATCCGCGCGGAGCCTCCGCCCGCCATGACTGAGTATTGGGTG
AGCCAAGGAAACAAATGGTGCGACTTGTGCAAAATCTTTATATCTAACAATCCGTTCAGC
ATCAGGACACATGAACTCGGCAAACGCCACAAGGACAATGTCACCCAAAGATTGTCTACG
ATGCAAAAGGATGGCGCTGCTAAGGAAAAGGAGCAGCAGCAAGCAGCTAAAAAGAGTTAC
CAAAAAGATTTGGAGAATAACCAGAGAAACACCGATGGTGACAGTTCTGCAGCACCTGGA
GAAGGATGGGTATTTGACTCAACTTCATGATATTATTATGATAAGTCTACTGGACTTTAC
TA

Homology of Contig U35_25136 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g11170.1	244	5e-51	protein\|formin-binding protein-related, putative, expressed
Brachypodium v1_2	Bradi1g45900.1	244	3e-56
Arabidopsis v10	None