barSeed - Barley Seed Development Database

Probe CUST_32872_PI390587928

Source Contig U35_37111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32872_PI390587928	Hv_44K_v2	ATACACATCACTGATGCATTCCCTACTTTCCTCATGATATGTCAGGTTGTGTTGGAGAGA	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56471.3	6275	2e-24	441 - 500	100	60 / 60	plus	ABC01811
MLOC	MLOC_56471.2	3196	2e-24	677 - 736	100	60 / 60	plus	ABC48531
MLOC	MLOC_56471.4	3556	2e-24	193 - 252	100	60 / 60	plus	ABC01810 ABC01811 ABC48531
Harvest21	ABC32751	621	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_37111	621	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_37111 621 Hv_44K_v2
GAAATAGCTTTTATTACACAATAACCTAAGTTTTGACCTTTGACTATGTAAGGCAAATTT
ACATTGAGTGCATATATGTCATGATTTTCTTCCCATGTGTCTAACTAGTTTGTATCAAAT
CTACAACCGCATGCATTTATACTTTCTAAAATAATGCAACACATCTTCTTTTCAGAACTA
GACAGGCAGAACAACGGGAAGGCATGTGTATTGGGTGACACTACACGGATACTGAAGGAT
TTAGTTTCACAAGTGGAATCTCTTCGGAAGGAGAATACCACACTGAAGAATGAATCTCAC
TATGTAAGATCTTTTGAATAGAGCAACTCCATTCAGCAATTTGATGATCTGTGTCTATTA
TATCATGGATATGAAAATGTTACTAGACCATATACTTGTGCCGAGATGCCTTCAGAATAG
GAAACCAATCCGATCAATTAACATTTATGGCTCCATGCCAAGTAGTATTATTCATGAACA
AATAGGAACTAATTTACACTATTCTCACTACTCAGATAATACACATCACTGATGCATTCC
CTACTTTCCTCATGATATGTCAGGTTGTGTTGGAGAGAAATGAACTCCGTGATGATAACA
GTATGCTTCGCAATGAAATCC

Homology of Contig U35_37111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None