barSeed - Barley Seed Development Database

Probe CUST_32849_PI390587928

Source Contig U35_25149

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32849_PI390587928	Hv_44K_v2	GCACGGGGAAGAGTGCCAAGCTGCGGGTCAAGGAAACCTTGCGTGCCTTCAACAGCCACT	477	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.012	1.881	1.246	0.582	0.434	0.369
Raw	257.732	341.995	215.994	147.202	40.587	39.093

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61815.2	2677	2e-24	2111 - 2170	100	60 / 60	minus	ABC43067
MLOC	MLOC_61815.3	2232	2e-24	1690 - 1749	100	60 / 60	minus	ABC43067
MLOC	MLOC_61815.1	2543	2e-24	1939 - 1998	100	60 / 60	minus	ABC43067
JLOC1	JLOC1_40417.2	2665	8e-25	513 - 572	100	60 / 60	plus
JLOC1	JLOC1_40417.1	2558	8e-25	505 - 564	100	60 / 60	plus
Harvest21	ABC25298	550	3e-25	478 - 537	100	60 / 60	plus
Harvest35	U35_25149	537	3e-25	478 - 537	100	60 / 60	plus

Contig Sequence (537 bp)

>U35_25149 537 Hv_44K_v2
TCCGCTTCCTCCCCCTCTTCCGTTTCCGCCGGCCCATCCCCTCCTCCGCCGCCGCCTCGC
TCCTCCGCGCCGGCACCGTGTCTGTGGAGCTCCCGCTGATGGATGCGATGGATTCGGTTG
TCGTCATGGAGGTGGCGCCGGTGCCGGACCCGCTCTTCGTCGGTGCCACTCCTCTGATCC
TGGCGCCACCGGAGTCGGAGCTCGTGCTGCGCCGCAGCGCCCGCTGCCTCAGCAGGCCAC
GCGTCCCAGTCTACGCGGAGCCTGTGGAGCCCAAGCAGTCCACCGGCCGCCGGAGCCGCC
CCAAGAAGAAGAGGGATGCGGAGAACCAGGACCCGTCTCCGCAGGTCGCGGCCAAGGTGC
CCAGGAAGGCCGCCAAGGTCGAGCCAAAGGAGAGGAAGCCGATGCCGGTGGTTGCGCCGG
AACCGGTTCCTTCGGCTGATCTCACCGGAGCTGCTGCTGTGGAGGACGATGCCCTAAGCA
CGGGGAAGAGTGCCAAGCTGCGGGTCAAGGAAACCTTGCGTGCCTTCAACAGCCACT

Homology of Contig U35_25149 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None