barSeed - Barley Seed Development Database

Probe CUST_32846_PI390587928

Source Contig U35_37123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32846_PI390587928	Hv_44K_v2	TTGATATCTCTCTCCAAGATGTATAAGGGTTGGGCATGCTTATATCAAGTTACGGACAAA	14	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.506	3.040	0.962	0.857	0.705	0.749
Raw	34.248	47.993	12.680	18.809	3.622	5.060

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71767.1	1968	2e-23	1500 - 1557	100	58 / 58	plus	ABC11149 ABC11460 ABC32770
JLOC1	JLOC1_47716.1	1745	1e-23	1340 - 1397	100	58 / 58	plus
Harvest21	ABC32770	557	3e-25	15 - 74	100	60 / 60	minus	ABC32770
Harvest21	ABC11460	1505	4e-24	1265 - 1322	100	58 / 58	plus	ABC11460
Harvest35	U35_37123	557	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_18771	1536	4e-24	1296 - 1353	100	58 / 58	plus

Contig Sequence (557 bp)

>U35_37123 557 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTCCGTAACTTGATATAAGCATGCCCAACCCTTATACATCTTG
GAGAGAGATATCAAGTACTAGTACTTGATATAAGCATTAGCATAATGTTTGGAGAAATGT
AAAAGCGGTAGCATCGATCATTATTTCGCTGGATACTAGGACTCCATATCAACCTGGTCC
CTTTATTCTGGAATCCTTATTTGGGAAGTACGTTGTCACAAGATGCTCCCTAGTTTTTGT
AGTTAGCTAGGAGAGACTCAATAGCTGCATTTTTGGCATGTACGTCTTCATACCGGATTC
GATAGCCATGCCCACTCAAAATCTAGGTCCATTAACTTCCTCATGCTATCCAGTTGCAAA
TTCACTGATTGCTTGCTGTACATCCGAAAGAGATTCAGTTCGTCTGAATATTCTGATTTT
GCGACATGGTCGCCAGTGAATAGTGCCTTTAGCGGTTTGTACAACAAGCAGACCGATCCT
TCGAAGAAGCCGATGTTGCTAACAAGAGACATTGCATTAGAAGTGAAAATGGAAAATCTT
AGAATCAACTCTTTTTG

Homology of Contig U35_37123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None