- Probe CUST_32830_PI390587928
- Source Contig U35_49107
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32830_PI390587928 | Hv_44K_v2 | TGTAATGATGCATGCCATCTCGCATGATTTACCCAACAAACGTTTTCATGTTCCAAAAAA | 11 | GeneList: red MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.400 | 2.048 | 1.758 | 0.834 | 0.289 | 0.382 |
Raw | 748.768 | 1712.442 | 1247.940 | 973.801 | 112.381 | 165.507 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_49107 | 324 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (324 bp)
>U35_49107 324 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAACATGAAAACGTTTGTTGGGTAAATCATGCGAGATGGCAT GCATCATTACAAATCACGCCCCGAAAGGGACCCCGATGAAATGAAATGAAACATTCATTC AATCAAGCAAAGTTGTTACTGCGGTTGCGGTTGCGGTTGCGGCTGCGGTTGCAAAACAAT CTTGGCCACGGCCTGCGCCGAAATGGGCGACAGGCTCAGCGCGCACAGGCTTTCCCATGC CGCAGCCACGGCAAACGACTCCTCCTTCTTCTCCTTCTCCTCTTCTTCCTAATTCTCCGG GAGCTGCTCATTCTCCTTCTCCTT
Homology of Contig U35_49107 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |