- Probe CUST_32821_PI390587928
- Source Contig U35_25157
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32821_PI390587928 | Hv_44K_v2 | ATCAGCGACGCCAAGCTCCGCACCCTCCGCGGCGGGTTCACGCAAGCCGCTAGCCTATAC | 319 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.639 | 0.709 | 2.453 | 2.027 | 0.764 | 0.748 |
| Raw | 490.508 | 854.639 | 2548.460 | 3222.043 | 454.978 | 474.141 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_4860.1 | 1778 | 3e-21 | 831 - 890 | 97 | 58 / 60 | plus | None |
| JLOC1 | JLOC1_3082.1 | 1415 | 2e-21 | 493 - 552 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC25798 | 379 | 3e-25 | 320 - 379 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_25157 | 379 | 3e-25 | 320 - 379 | 100 | 60 / 60 | plus |
Contig Sequence (379 bp)
>U35_25157 379 Hv_44K_v2 CCCGCCCAGCACCATGGCGATGGCGTCCACCGGAGCCGTCCCCTGCTCGGTCCTCCTGCT GCTCCTCCTCTGCGCGTCCCCGCTCTGCCAGGTCGAGGGCGGGCGGCACAACATCACGGA CATCCTCGCCGCCGCCAGCCCGGACTTCGCCCAGTTCAGCGCCGCCCTGGCCGCCGCGAA CCTCAGCGCCGAGATCGACGGGCGCAGCCCCGTCACCGTCCTCGCCGTCGACAACGCCGC TGTGGCGCGGCTCGCGGCGCGGGGGCTCCAGCCGGACGCCGTCGCGCGCGTGCTCTCCCT GCACGTCCTCCTCGACTACATCAGCGACGCCAAGCTCCGCACCCTCCGCGGCGGGTTCAC GCAAGCCGCTAGCCTATAC
Homology of Contig U35_25157 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |