- Probe CUST_32805_PI390587928
- Source Contig U35_49111
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32805_PI390587928 | Hv_44K_v2 | TTGTAGCTACTGATGGTTTGCTTAGCACATGTCACTTATTACTCGCGATGGTTTAAAAAA | 11 | GeneList: thistle2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.368 | 0.994 | 1.405 | 1.377 | 0.786 | 0.952 |
| Raw | 326.301 | 1429.801 | 1676.607 | 2570.554 | 513.212 | 695.068 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_9669.2 | 2065 | 6e-21 | 1665 - 1717 | 100 | 53 / 53 | plus | |
| JLOC1 | JLOC1_9669.1 | 2418 | 6e-21 | 2018 - 2070 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_49111 | 275 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (275 bp)
>U35_49111 275 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAACCATCGCGAGTAATAAGTGACATGTGCTAAGCAAACCATC AGTAGCTACAACTAGTAAATGACCCTAGATACAACCAACTTTGAGCTCACCACACCTGGT TGCTACGACGGGGGTTAAGCCACCCGACCACAAAGACGGGAGAAATGACTCCTTTTATTT AAACTGGGCCGCCCTAAGGTTGTACCTCGCCCACGACTCGGCCACGACCGGGGGCACCAC TTTTTTTTCGGCCAAGGAGGAAATCGCCTTGGCCC
Homology of Contig U35_49111 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |