barSeed - Barley Seed Development Database

Probe CUST_32802_PI390587928

Source Contig U35_2199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32802_PI390587928	Hv_44K_v2	CTTTTATATGTTTTCTTCCCAATAAGTGACTTCATGTTGTAACCTGTAAGGGCTATGCTT	956	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.107	0.649	0.730	1.578	1.255	1.768
Raw	4.598	59.420	55.369	199.943	50.294	79.269

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11634.1	747	2e-24	48 - 107	100	60 / 60	minus	ABC06546
MLOC	MLOC_11634.2	1160	2e-24	24 - 83	100	60 / 60	minus	ABC06546
JLOC1	JLOC1_7726.1	1241	8e-25	1058 - 1117	100	60 / 60	plus
Harvest21	ABC06546	1045	3e-25	935 - 994	100	60 / 60	plus	ABC06546
Harvest35	U35_2199	1067	3e-25	957 - 1016	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_2199 1067 Hv_44K_v2
ATCACCAAACCGACCCATCAGTTGTTCATTCGGACGACTCGAGCAACCAGCGTCTCTTCC
TTATCACGTCCCTACCACGTTACTACGTACTCCTACGTCGCAATGGCCGCAGCTGCAGCA
CCAGCCAGGCCCACGAAAGAAGCGCTCCCGCCTGCACTGGGCGCCGTCTCCGAGCCCCCT
CCCCTCTTCGATGGCACCACCAGACTGTACATTTGCTACATCTGTCCGTTTGCCCAGCGT
GCCTGGGTTACCCGGAACTGCAAGGGTCTGCAGGACGAGATCAAGCTGGTCGCCATCAAT
CTGGAGGACAAACCAGCATGGTACAAGGAGAAGGTTTACCCACAGGGCACGGTGCCTTCC
CTGGAGCACGACGGCAAGGTCACCGGAGAGAGCTTGGATTTGATCAAGTACATCGACACC
AATTTCCAAGGCCCGGCATTTCTCCCTCAAGATCCTGCTAAGAGGCAGTTTGCTGATGAG
CTGATTGCTTACGCTGACGCCTTTACCAGAGCACTCTACTCGCCCTTGATCTCCCAAGTG
GCCATGTCAGACGAAGCTGTTGCCGCTTTAGACAAGATCGAAGCTGCCCTGTCCAAGTTC
AGCGACGGCCCGTTCTTCCTTGGCCAATTTAGCTTGGTGGATATTGCGTACGTGACGATC
TTGGAGAGGGTTCAGATATACTATTCCCACCTGAGGAACTATGAGATCACCAAAGACAGG
CCCAACCTTGAGAGATACACCGAGGACATGAACAAGATCGAAGCATACAAGCAAACCAAA
AATGCCCCGCTAACCTTGCTTGAAGCTGCCAAGAGGCATCTCAAGATTGCTTGAAGAAGC
GGTGATGTCGCCAAGGATAACGGTCGCTACGTGGGAACGGTCGCACCTGAGTTGGCGAAG
ACTGAACTCTTATCACTGGGGCTTCTTTTCCCACCATTATCATAATTACCTATTTACTTT
TATATGTTTTCTTCCCAATAAGTGACTTCATGTTGTAACCTGTAAGGGCTATGCTTTTTA
TAAAACAATAACATACTCCATCTTGTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g17480.1	244	1e-130	protein\|IN2-1 protein, putative, expressed
Brachypodium v1_2	Bradi1g66020.2	242	1e-146
Arabidopsis v10	AT5G02790.1	235	2e-83	\| Symbols: GSTL3 \| Glutathione S-transferase family protein \| chr5:632877-634858 FORWARD LENGTH=235