barSeed - Barley Seed Development Database

Probe CUST_32789_PI390587928

Source Contig U35_31212

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32789_PI390587928	Hv_44K_v2	AAATCCGCTTTCTTCGACTTGCTGTGATTCTTCCGATTTCTTGCCTCGATCTTGATTTGT	105	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.901	1.653	1.281	1.060	0.555	0.417
Raw	43.206	40.058	26.655	34.990	4.850	3.534

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373867	1003	2e-24	133 - 192	100	60 / 60	plus	ABC17643
MLOC	MLOC_63807.1	689	2e-24	506 - 565	100	60 / 60	minus	ABC17643
MLOC	MLOC_63809.1	2837	2e-24	2652 - 2711	100	60 / 60	minus	ABC17643
JLOC1	JLOC1_41837.1	2434	8e-25	2249 - 2308	100	60 / 60	minus
Harvest21	ABC17643	996	3e-25	106 - 165	100	60 / 60	plus	ABC17643
Harvest35	U35_31212	601	3e-25	106 - 165	100	60 / 60	plus
Harvest35	U35_6988	1021	1e-23	131 - 190	98	59 / 60	plus

Contig Sequence (601 bp)

>U35_31212 601 Hv_44K_v2
GTTCCTTCTTCAGTCAGCCGCCGCCAAGTTCTCATCTGGATCTCTTGCTTGGCTAACTAA
TCTCCGATTCTCATCCTAGTTGTTCCTTTTTTTTCCTTCCAAAAGAAATCCGCTTTCTTC
GACTTGCTGTGATTCTTCCGATTTCTTGCCTCGATCTTGATTTGTTTTCTTGTTTTGTGG
GTGAGAATTTGATGGTTGGGACATGGGAGGGATGGCGTGATGATCTTCTTTGAAGAGTTG
CAGAAGCATTCATGTGCATTACATCTCAATTCCACACGAGATTTCTGACCTTTCCTCCTC
CTCGAATCAACAGATCTGGAATGGTGGTTTTGCTTTTTCTTTCATCAGTCGGCAATGAGG
AACTAAACCTGTGCCGGAGGCGGATGCGCCCGTGTCGGTAACACAACCCTCTAAGAAGTT
CTGAGCCACCCCGAGCTCGATCCGATTCTTGATGTTTTCTGTGTTGATTGGTTTTGATTT
GACGATGGATTGGGTGTCATTTGACGCGAGGTGATGATGTTTATGTATGATAGTCTGTCA
ATCCCCTGATGTCACAAGGTGAAGACACGCATACATCCCGACAGGCTCTGATCGCTCCTG
T

Homology of Contig U35_31212 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None