- Probe CUST_32787_PI390587928
- Source Contig U35_31214
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32787_PI390587928 | Hv_44K_v2 | TTCCCCCGGACGTGACTACGGCGATCAGCCTCCTCTCGCCCTGTACGACTGTACGTATGT | 293 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.375 | 3.057 | 1.360 | 0.714 | 0.339 | 0.490 |
| Raw | 143.276 | 158.549 | 62.264 | 50.358 | 8.702 | 14.195 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK354026 | 5414 | 2e-24 | 5115 - 5174 | 100 | 60 / 60 | plus | ABC02915 ABC02916 ABC11995 ABC11996 |
| MLOC | MLOC_79305.1 | 1281 | 2e-24 | 788 - 847 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_52831.1 | 1184 | 8e-25 | 785 - 844 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31371 | 356 | 3e-25 | 294 - 353 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31214 | 356 | 3e-25 | 294 - 353 | 100 | 60 / 60 | plus |
Contig Sequence (356 bp)
>U35_31214 356 Hv_44K_v2 CCGCGGCGAGGGCGCTGGCCACGCTGGTGGTGGCGGCAAGCAGCCACCGGAAGGTGTTCA AGAAGGACGAGATGGGCATCGTGAACGCGGTGCAGCTGCTGGACCCGGCCGTCCGGGGCG CCGACAAGCGGTTCCCCGTGTCGTTGCTGCTGGCCGTGTCGCAGTCCCGGCGGTGCCGGA AGCAGATGGTGGCCGCCGGCGCGTGCGGGTTCCTGCAGGGGCTCCTGGCCGCGGAGGTGG ACGGCGCCAAGAAGCTCTCCGAGTGCCTCGGCCGGGGCAAGATGCTCGGCGTGTTCCCCC GGACGTGACTACGGCGATCAGCCTCCTCTCGCCCTGTACGACTGTACGTATGTGCT
Homology of Contig U35_31214 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |