barSeed - Barley Seed Development Database

Probe CUST_32784_PI390587928

Source Contig U35_31217

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32784_PI390587928	Hv_44K_v2	TTGTGTACGTGTTGTAGTACGTTTCTTCAGTGTTGTTGTGTGTGCGTGTGCGTGGGATGG	522	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.686	2.785	2.095	1.138	0.450	0.483
Raw	6385.890	41384.810	25878.267	22850.403	3066.137	3612.377

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (582 bp)

>U35_31217 582 Hv_44K_v2
CGCCATCTCATCGAGACTGAAGCCGCCAAGAAGTTTGGAACTGAGCTCCACTCCTTTGTC
GTTGGCCTGGAGGGGTCACCTGACCTGAAGGCCGCGAGAGAGGTTGCTGACTATCTGGGA
ACCATCCATCACGAGTTCCATTTCACTGTCCAGGATGGTATCGACGCCATCGAGGAGGTG
ATCTACCACAACGAGACGTACGCGTGCAGCACGCCGGCGGCCATCGAGTGGGTGGCCCAG
TGGAAGGCCTCCAACGACCCCTCCGGCCGGCTCATCGCCTCCCACAACGATGCCACCCCC
GCTCATGCCCACGCCAACGGCAACGGTAACGGGGCGGTGGCCAACGGGAAAGCCAACGGG
AACGGCACGGCGAACGGGAACGGGAACGCCAACGGGACTCTGGTCCCGTGCTAGCCGTCG
CCGCTCGCGCTAGCTGGTTCGGCCGTGGTGGGTGCGTGTGCGTGTGCGCGTGTCCTCGGA
CTGATGAGCCATATGCCATTGGCGCCGCGGCCGGTGCTGTTGTTGTGTACGTGTTGTAGT
ACGTTTCTTCAGTGTTGTTGTGTGTGCGTGTGCGTGGGATGG

Homology of Contig U35_31217 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None