barSeed - Barley Seed Development Database

Probe CUST_32765_PI390587928

Source Contig U35_43209

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32765_PI390587928	Hv_44K_v2	GTCAGTGTAATAGGCATGTTGTTGTTCTTTGATTTGACTTGAGATGTCAGTCATTTTTTG	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51087.1	1972	2e-24	60 - 119	100	60 / 60	minus	ABC10837 ABC39622
Harvest21	ABC39622	538	3e-25	21 - 80	100	60 / 60	minus	ABC39622
Harvest35	U35_43209	538	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (538 bp)

>U35_43209 538 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGACAAAAAATGACTGACATCTCAAGTCAAATCAAAGAACAAC
AACATGCCTATTACACTGACTCATTCTCCACAAAAATGAATTTCACTAACACACTTGTGT
ACAATTTAAAGCACCCTGAAAAAAGACTACAAGTTGCCTCCTTGGACCAACATTAACTAG
GGGTTAGTTGATGTACATGCTACAGAGCGGCTACTGAGAGGATGACACTGCTTTATAAAC
CAGACAAGGCATCTCTACCATGTCATCCAGATAACACCAGTCAAGAACAAGAGCAGATGC
CATAAATGCCACCAGCAAGATGTGTTACAACTTGCAAGTATAACGATACTGCGAACACGA
TATACCTCTTGATCTTACAAGTACGACCATACTACTCAATCTTACAAGTACGACGATACT
ACTCAAGTTTTGCTTAAAGCTGGGTCTCGATGATCGACGGGGACTGGTCCAGATCAGGCT
GCCTTTGAACACTTGAGCAACTTCTTATCGAAAGATCTGACTGTGATAATAACCCCCT

Homology of Contig U35_43209 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None