barSeed - Barley Seed Development Database

Probe CUST_3275_PI390587928

Source Contig U35_4167

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3275_PI390587928	Hv_44K_v2	ACATATATTTAGGGTGCGTCACCCTTGACCTTGGGAATAAAGAATTTAGTTCAAACCAAA	574	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55658.4	3426	9e-22	3364 - 3422	98	58 / 59	plus	ABC42998
JLOC1	JLOC1_35933.3	3129	5e-22	3070 - 3128	98	58 / 59	plus
JLOC1	JLOC1_35933.2	3329	5e-22	3270 - 3328	98	58 / 59	plus
JLOC1	JLOC1_35933.1	3365	5e-22	3306 - 3364	98	58 / 59	plus
Harvest35	U35_4167	648	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_4167 648 Hv_44K_v2
TCGAGCACTTGATACATTCCAGTCCCTTGGTCAGTCTCAAAACCAAACCATGCGGTCTGA
ATCTGCGGCCTCGCTAAATATGGATGATCAAGCAGCTTCAAACTGCAAGCTGGCGAGAAG
GACTTCAGTGAACAAAAGCCATGGGAAATGTTGAGCGAAGCTCCTTCATACCCAGCTCGT
TTCGTCCACCTGCTTCCCAAACATGCATGGCATTCGGCCAAGTTCTCCAGATTGGCGCAT
CCGGGTGCTTATTTACATGCAGTGCTGCTGCCTGCTGTACGTACCCTTCGTAAATTAGGT
TTGTCATCGGAGGAAGAAAACAAGTTAATAATCCATTTCACCATTTCAGCTAGTCTGTAG
ATTGTTGCCCCATATGGTGGGCATGGAATTGCACATGTTGTTCCAGTGATTTTACTGTCT
TTATATCCGAAGAGTCGATTCAACTCGTCATCCCTCGTTCCAAAAGGAACATTTGCAGAA
TTTTGCAAGTGAATTGATTGTTTTTCGCCCCCATGTTAAACTTGTAAAACACTGTTTATA
TTCTTAGGAAAGGCCTGACACCTAGTTCAAAGGAACATATATTTAGGGTGCGTCACCCTT
GACCTTGGGAATAAAGAATTTAGTTCAAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_4167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None