- Probe CUST_32751_PI390587928
- Source Contig U35_43214
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_32751_PI390587928 | Hv_44K_v2 | TGTACCTTGTTGCCTACGTGATGCACACAATTACTGCTAGATCATTTGCTCTTTAAAAAA | 11 | GeneList: greenyellow MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 8.179 | 5.857 | 1.394 | 0.693 | 0.173 | 0.156 |
Raw | 3224.090 | 3887.341 | 758.903 | 647.577 | 49.389 | 52.229 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_53469.1 | 1168 | 3e-22 | 914 - 969 | 100 | 56 / 56 | plus | ABC02247 ABC02250 |
MLOC | MLOC_53469.2 | 832 | 3e-22 | 748 - 803 | 100 | 56 / 56 | plus | ABC02247 ABC02250 |
JLOC1 | JLOC1_34356.1 | 1063 | 1e-22 | 795 - 850 | 100 | 56 / 56 | plus | |
Harvest21 | ABC02246 | 1040 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
Harvest21 | ABC02252 | 367 | 1e-23 | 294 - 354 | 98 | 60 / 61 | plus | |
Harvest21 | ABC02250 | 772 | 1e-23 | 699 - 758 | 98 | 59 / 60 | plus | ABC02250 |
Harvest21 | ABC39634 | 522 | 5e-23 | 32 - 87 | 100 | 56 / 56 | minus | |
Harvest21 | ABC02251 | 580 | 5e-23 | 73 - 128 | 100 | 56 / 56 | minus | |
Harvest21 | ABC02247 | 708 | 5e-23 | 585 - 640 | 100 | 56 / 56 | plus | ABC02247 |
Harvest35 | U35_43214 | 555 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
Harvest35 | U35_14834 | 859 | 3e-25 | 699 - 758 | 100 | 60 / 60 | plus |
Contig Sequence (555 bp)
>U35_43214 555 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAGAGCAAATGATCTAGCAGTAATTGTGTGCATCACGTAGGC AACAAGGTACAGCATCAAGTATCAACAGAAAGACATGGATACGGGGGATCCGATTCCGAT CCATGAGATCAGACGGGATCCATGGTACACAAGCACGAGGCGAGGCGAGGCGAGGATTAG ATTTAGATCTTGCCGCGTGGTCCCGGGGTGGGCGGCAGCTGGGGCCCCTTCTTGATGGGG AGCAGGTCGGGGGAGGCGGATGCGCTGACGTAGGCGACCAGGGAGCCGCCGCCGATGAGC AGGAACTTGAGCAGCAGGCCGCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTG CTCTGCAGGCCGTTGTAGTTTTTTTAAAGATTCCTAGCAACCTTCTTTTTTCTTCTCGAT ATAAACACACACCCACAAGCACACATCGAACGAGATCCAAACCAGCCAAGAACAATGGCG GGCGAGAAGGGCCTGGTGCTGCTGGACTTCTGGGTGAGCCCGTTCGGGCAGCGCGTCCGC ATCGCGCTGGCCGAG
Homology of Contig U35_43214 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |