barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3274_PI390587928Hv_44K_v2CCATCGCTGAGATGGACATAACTTTACTGAAATAATCAGTTGCTCGATAGATTTTTTACA832GeneList: darkred
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0541.3701.6811.1680.3690.362
Raw 2882.5635820.0706287.5636945.113755.554807.257



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC094119474e-24833 - 89010058 / 58plusABC09411
Harvest35U35_41689443e-25833 - 89210060 / 60plus



Contig Sequence (944 bp)

>U35_4168 944 Hv_44K_v2
CCCTCCAAACCCTCTCCACCCTCCCGCCGATCCGATCCGATCCGATCCGCCCTGCCCCGC
TCCTCTCCTCGATCCACCCCCCGCGCGGAACGAGCGATGGCGAGGGGCGAGAACAGCGAG
TCGCACGGCAGCGGCAACGTCCCGGCGGCCCCCGCGGCAGGGGCAGCGTCCGCGTCCTCG
GGGAAGCAGGCGCCGGCGGCTGCGCGTGGCGCGGACGGGCAGTCGGTGGTGCGGCGGCTG
CAGTCGGAGCTCATGGCGCTGATGATGGGCGGCGACCCCGGGGTGTCGGCGTTCCCGGAG
GGGGACAACATCTTCCAGTGGGTCGGCACCATCGACGGATCCGCCGCCACCGCGTACGAG
GGCACCTCCTACCGCCTCGCGCTCGCCTTCCCCAGCGACTACCCCTACAAGCCGCCCAAG
GTGCGGTTCGAGACCCCCTGCTTCCACCCCAACGTCGACAACCACGGCAACATCTGCCTC
GACATCCTCCAGGACAAGTGGTCCTCCGCCTACGACGTCCGCACCATCCTCCTCTCCATA
CAGAGCCTGCTCGGAGAGCCGAACAACGACTCCCCACTCAACACACAGGCGGCTGCGCTC
TGGGCGAATCAAGAAGAGTTCAGGAAGATGGTGGAGAAGCTCTACAAGCCGGCGTAAAGA
GGAACAAGAAGGCGGGATCTATCGGATTGGCGGCTACACATGGGCGTCGCTTGATCGGAT
CTGGTGTTGGATAGATTCTTGGCTGTTGGTTGGATACTTGGACATGTAATTGATTGGAGC
TTCGATTGCTCGGTGGGTTTAGCAACCTGTTATGTCATGCTGTTCTCTTCTCCCATCGCT
GAGATGGACATAACTTTACTGAAATAATCAGTTGCTCGATAGATTTTTTACAAAAAAAAA
AAAAAAACATGTAGCTGATTCGAGTTTAAAAAAAAAAAAAAAAA



Homology of Contig U35_4168 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g16650.11928e-98protein|ubiquitin-conjugating enzyme, putative, expressed
Brachypodium v1_2Bradi2g10220.11827e-107
Arabidopsis v10AT1G50490.11809e-81| Symbols: UBC20 | ubiquitin-conjugating enzyme 20 | chr1:18705005-18706303 REVERSE LENGTH=180