barSeed - Barley Seed Development Database

Probe CUST_32745_PI390587928

Source Contig U35_31241

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32745_PI390587928	Hv_44K_v2	GATGGAGTTAGAAGTTGTAAATATGCATTGTTGTATCGCGACCTGAATGATGAATGAAAT	439	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.815	4.038	1.099	0.699	0.227	0.346
Raw	3179.053	7389.843	1716.393	1829.923	197.442	333.257

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67213.1	2173	2e-24	2009 - 2068	100	60 / 60	plus	ABC00068
MLOC	MLOC_67213.3	1459	3e-21	1406 - 1459	100	54 / 54	plus	ABC00068
JLOC1	JLOC1_44348.2	2790	8e-25	2458 - 2517	100	60 / 60	plus
JLOC1	JLOC1_44348.1	2335	8e-25	2003 - 2062	100	60 / 60	plus
Harvest21	ABC31399	609	3e-25	440 - 499	100	60 / 60	plus
Harvest21	ABC00068	752	3e-25	663 - 722	100	60 / 60	plus	ABC00068
Harvest35	U35_31241	609	3e-25	440 - 499	100	60 / 60	plus
Harvest35	U35_18196	990	3e-25	802 - 861	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_31241 609 Hv_44K_v2
CTCACCCAGACCGTTCCGTTTCTTCACTACTGCGCAGATCAACAACAGCTTCCTCTCTTC
TCTTCTTCCCTCTAGCTACTCGGCTGATTCCTTTGATCCATCGTCCGTTCGTTGCATCGT
CCGGTCGCAAGAAAAGAGCAGGCAGCGTCTCTTTCCATTGCTTTCTAGCGACACCTCCGG
CTCCGACCTTCCATGGCCATCGCCTCCCGCATCACGAAGCGCGCGCTCTCCACCTTCGCC
GCCGCAGCCAAGCTCCCGTGGAGCACATCATCCCCTACCTCATCCGGCGGGCCGAGGAGA
ACAGAGGACTGCTCTCCGCTTCCGCGTTCGACAGGCAGCTGCTCCGGAAGGAGCTCGTCA
GGAGGTTCATGAACGCGGTGATGGGACGGGAGTGAAGCGGGCGGCCGGCCGGCCGGGTGT
CCACGTACCGGAGAGAAGCGATGGAGTTAGAAGTTGTAAATATGCATTGTTGTATCGCGA
CCTGAATGATGAATGAAATAAACGAAATAACCCTAAAAAAAAAAAAAAAAGGGCGGCCGC
CGGAAGATCTTCTCGGGGAACGCATTCCCCACGTCGTGGGACTGGAAGAGGAAGGGGGTC
ATCTACACC

Homology of Contig U35_31241 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None