barSeed - Barley Seed Development Database

Probe CUST_32727_PI390587928

Source Contig U35_31253

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32727_PI390587928	Hv_44K_v2	AAATTTAAAATTCCAAATTTCTCGCTCGCCTCCTTCCTACTAATCCCGGCAGGAGGAGAG	107	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64388.14	4073	2e-24	2837 - 2896	100	60 / 60	plus	ABC19630 ABC24807
MLOC	MLOC_64388.13	4065	2e-24	2829 - 2888	100	60 / 60	plus	ABC19630 ABC24807
JLOC1	JLOC1_42278.4	4071	8e-25	2709 - 2768	100	60 / 60	plus
JLOC1	JLOC1_42278.2	4087	8e-25	2725 - 2784	100	60 / 60	plus
Harvest21	ABC31413	374	3e-25	108 - 167	100	60 / 60	plus
Harvest35	U35_31253	374	3e-25	108 - 167	100	60 / 60	plus

Contig Sequence (374 bp)

>U35_31253 374 Hv_44K_v2
GTCCGATGTTCCCGTGGTGAACAATCATTGACGCGCACCTCCTTCCTTGGCAGTCGTGCT
GGTGGCCATCCTATCCTAATAAGGGAATCTATTCTTAACCCGCTCCCAAATTTAAAATTC
CAAATTTCTCGCTCGCCTCCTTCCTACTAATCCCGGCAGGAGGAGAGGAGAATCCCGTGG
CCTCAAAGCACCGGCAGGCAGACACCGCCTCCGCCCCGCTCCCCCCCAACGCCCGCCCAT
GGCTCCGGCTCCGGCGTCGAGCGGCCGAATCCGGCCCTGGCTGGTGGTTGGCGACCTGGT
CCTGGCGGTGCTGTGGGTGTGCGCGGGCGCGCTGGTGAAGCTGGCCGTGTACAACGTGCT
CGGACTTGGGGGCC

Homology of Contig U35_31253 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None