- Probe CUST_32699_PI390587928
- Source Contig U35_43244
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32699_PI390587928 | Hv_44K_v2 | CAATTGCTTGTTGTCGCCTACAGACTACAGAGAGTATGGTGTCTTGCCTTCGTTAAAAAA | 11 | GeneList: bisque4 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.474 | 2.355 | 1.706 | 0.752 | 0.323 | 0.325 |
| Raw | 347.646 | 874.096 | 539.527 | 373.546 | 55.781 | 61.581 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_40066.1 | 901 | 3e-21 | 457 - 510 | 100 | 54 / 54 | plus | ABC39707 ABC41237 |
| JLOC1 | JLOC1_26177.1 | 688 | 2e-21 | 457 - 510 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC39707 | 526 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC39707 |
| Harvest35 | U35_43244 | 526 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (526 bp)
>U35_43244 526 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACGAAGGCAAGACACCATACTCTCTGTAGTCTGTAGGCGACA ACAAGCAATTGTTCTCGTCGCTCTGAAAATTTGACATCTCTGCTGATGTACAGTATACAC GACCCTCTAGAGTCTAGACTCTTATGAACAAGTCGCCGGATTTACCCGGCATCACTCTAT GTAACGTAGTCGTAACCCCCAAAATGCATGCTCGTATTATTTGCTTCTACTATATGCAGA CCGCCTATGTAAAATCCGAGCGCTGTGTGGAGTGGAACCTCTAGCTTCCGGGCGTGAACT TCATGCACATCGGCGGCTTGATCTTGGCCAGCGCGAGCAGCGACGACGGGAATATCCATA TCCCGTCGCCGCAGATGAGGCCGGAGGCCACCGCCGGTATGAGCAGCGCGGCCTTCTTCC CGTCGAGCTTGTGCCATAGGAACACGACGAGGCTCCCCACGCACATGTCGATGGCGAAGC TGGCGCCGACGAGGAACGGCACGGCCATGGCCATGGGCAGCGGCAC
Homology of Contig U35_43244 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |