barSeed - Barley Seed Development Database

Probe CUST_3268_PI390587928

Source Contig U35_4174

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3268_PI390587928	Hv_44K_v2	GTTTGGCCCATTTCTATTTGTACTGTAAATGCACTCTTTAAGATTGGTGTACTGTGTAAA	2111	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.868	3.005	1.374	0.634	0.337	0.302
Raw	61.397	97.494	40.001	28.323	3.694	3.791

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4727.1	1933	4e-23	1864 - 1920	100	57 / 57	plus
Harvest21	ABC24569	625	3e-25	14 - 73	100	60 / 60	minus	ABC24569
Harvest35	U35_4174	2184	3e-25	2112 - 2171	100	60 / 60	plus

Contig Sequence (2184 bp)

>U35_4174 2184 Hv_44K_v2
GACCGCGGCCCCCGCCCCTGCGGCGTCGGGCCCCTCCCCCGCGCCCGCCTCCACCCCAGC
CCACGCGCCCGCGGCGACCGTGTCCCTCGTCCTCCGGCCCCGGCGGGAGTCGTTCGAGCA
CGGGCTCCTGCCGATCCCCAAGCTGGTCTTCCCGGAGGGCACGCTCACGCAAACCCTCAC
GCAGCTCAAGGCGAAGCTCGCGGCGCCGGGCCACGGGCGCGTGGGCGCCGCGGCGCTCGC
GGAGGCGCTGCAGATCCCCGCCGACCAGGCCGCGCTCGCGCTCGGGACGCTCGCCGCGGT
CCTCCCCGGCGAAGGCGACGGCCCCGCCGCGGACGGCGCGTGGGAGGCCGACCTCCGCGA
CGTGCTCCTCTTCCTCTACATCCAGTCCTACAAGCGCCTCGTGCCGCGCGCCCACAAGGA
CTCGCCGTCCGTCGCCGACGTCTGGCCATCCACCTCCGCGTTCGACGGATACCTCTCCGC
GCTCTCACCGATCCAGCTTGTACGCAGTAATAGCCGTCGGTTTATGCCTTCGCAAGCAGA
TGAAGAAGCTCATCAGCTATCTTATTTACAAAAGCATATGGCCAATGTTTTAACTCTTTT
GGCAGATTCTGTTGATGGAGAGGGTGATGAATCTATGGTACTGACAATGGAGACTTTTGA
GCACCTTGGATTCTTGTTGCAGTTTTCTGAAGGAACTCCTTTAAGCCAAGCTGCTCCATT
TTTTGCGAATTCTGATCCAGACATGCCTGCTGCTCCTGTTCCGGCTACTCAAGTTCATGA
ATGGATTCTGCAGAATATAGCTTCTTCCTTGGAATACACTGCAGAAAAATCTATAACTAA
GGAAAACAATCAACGGAGTGTATCTGATCCTGATGTGGCAATGGCTGATGCTGTCACAAA
TACAAGAATTCAGAGCATCTCACCAACTGGTGCTTCTGTGCAAAATAATCCTGGATACTA
CCGAAATACGTCTTTTGTGGAGGGTATCTCCAAAACTTCTGTTGTCAAACACGGGTCTGA
TATTAAAGGGCATTCAATAAAGGTTTTGAATTGCCATGATTCTGTTATCTACATCCTAGC
CCCTCTCAAATATGCTACGGTGTATGGATGTTCTGACATAACTGTTGTTCTTGGTGCTAT
TGGCAAGGTGGTAAAAGTTGAGCATTGTGAACGTGTGCAAATAGTTGCGGCTTCTAAAAG
AATCTGTATTGCCAATTGTCGAGAATGTATCTTCTACTTGGGAGTAAATCACCAACCACT
TATAGTGGGGGACAACCATAAATTACAAGTTGCTCCATTTAATACTTATTATCCACAACT
TGGGGAGCATTTGGAACAAGTTGGTGTGGACCCTAGCGTCAACAAGTGGGATCAACCTTT
TGTGCTGGGAGTTGTTGATCCACATGATTCATTATCTCATCCTGCAGGGGTTTCTGATGT
ACAAGCCGAGTCTGCCACTTGTCTAGACCCTGATCTATTCACAGACTTCATGATTCCTAG
TTGGTTTGAGGCAGAAGGTCCTACCAAATACAATCCATTTACGTTACCTGAAGTTTACTG
GGCATCACAGAGGAAAAAGAATGCTTCTCTGGAAGACATTCAAAAGAGTTTACGGGAGCT
GGAGCTTGATGATAACCGGAAAAAAGAATTGGCATGTGCCCTTCATTCTCAATTCAAAGA
CTGGCTATATGCTTCAGGAAATATCCGCCAGCTTTACTGTTTGCAAGGCGAATAAGCATA
TATGATCTTCATCCGTAAGTGCTTAGGCGCACCTGTGAAGATTGTGCAGCATCCTTTGCC
CGGTCCATTGTGCATCCTTTGCCCGGTCCCCTTCCGTAGTCCAGTCCTGTCCATCCGACC
GCATCGTCCACGCTGACTTCTCGTCGACTGAGCTGATTCAACCATGCAGTGTTTGTCAAT
GTAAAAGAAATAATGTACTGCTCATTTTTGTCTACTAATTTTGATCGGCTTCCCCTTGTG
TTGGTTGTGGTTGGTGCAAGGATCCAAATGGGGGTTTGGTAGTTTCATATTTATATCCTT
TGTAACATATACGACCATGAAAGCGGTTACTCAATTCTTTAGTGAAAATAAACATTTATT
TTTGCTCATCAGTTTGGCCCATTTCTATTTGTACTGTAAATGCACTCTTTAAGATTGGTG
TACTGTGTAAAAAAAAAAAAAAAA

Homology of Contig U35_4174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g41110.1	624	protein\|tubulin binding cofactor C, putative, expressed
Brachypodium v1_2	Bradi1g35950.1	584
Arabidopsis v10	AT2G42230.2	568	C-CAP/cofactor C-like domain-containing protein \| chr2:17593705-17596563 REVERSE LENGTH=568