- Probe CUST_32682_PI390587928
- Source Contig U35_43254
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32682_PI390587928 | Hv_44K_v2 | TTGATGAGTCAAATAATGCGATCCCGGAAGAAGCCTGGTGTCATAATCAATATTGGTTCA | 345 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_8218.1 | 630 | 7e-23 | 415 - 471 | 100 | 57 / 57 | minus | None |
| MLOC | MLOC_8218.3 | 431 | 7e-23 | 222 - 278 | 100 | 57 / 57 | minus | None |
| MLOC | MLOC_8218.2 | 661 | 9e-22 | 222 - 276 | 100 | 55 / 55 | minus | None |
| MLOC | AK363561 | 2627 | 3e-21 | 855 - 908 | 100 | 54 / 54 | plus | ABC09434 |
| JLOC1 | JLOC1_5441.1 | 326 | 5e-22 | 2 - 56 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC39728 | 560 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC09180 | 694 | 6e-22 | 564 - 617 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC09179 | 1340 | 6e-22 | 563 - 616 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_43254 | 560 | 3e-25 | 346 - 405 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_3970 | 1340 | 6e-22 | 563 - 616 | 100 | 54 / 54 | plus |
Contig Sequence (560 bp)
>U35_43254 560 Hv_44K_v2 CCGGCATCGGGAAAGCGCTCTGCATCGCTTTTGCACAAAAGGGTCTATTTGTGACTGTGG TCGATTTCTCTGAACAAAATGGAAGAGAAGTTACTTCGCTAGTTCAAAAGGAAAACAAAA AGTTTCATGGAGATCTTGGAGTACCGTCTGCCATATTCGTCAAGTGTGATGTTTCTGTTG AAGGTGATCTAGCTGCTGCTTTTGCGAAACATGTAGACACATATGGTGGATTAGATATCT GCATCAATTGTGCTGGAATTGCTAACCTAACATTAGTTTATGATGATATATCCGACGGAA CTAAGACATGGAGGCATGCCATAAATGTGAACTTTGTCGCTGTTATTGATGAGTCAAATA ATGCGATCCCGGAAGAAGCCTGGTGTCATAATCAATATTGGTTCAGCTGCGGGCCTTTAT CCTATGTTCGCCGATCCCATATATACCGGGACAAAAGGTGGTGTTGTTATGTTTACTCGA TCACTTGCTCCATTGAAACGCCATGGTGTTCGTGTCAATGTGCTCTGCCCCGAGTTTGTT CAAACTAATATGGCTGAGCA
Homology of Contig U35_43254 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g28570.1 | 635 | 1e-83 | protein|zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed |
| Brachypodium v1_2 | Bradi4g32250.1 | 635 | 5e-87 | |
| Arabidopsis v10 | AT1G49670.2 | 652 | 2e-59 | | Symbols: NQR | ARP protein (REF) | chr1:18381591-18386021 REVERSE LENGTH=652 |