- Probe CUST_32681_PI390587928
- Source Contig U35_43255
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32681_PI390587928 | Hv_44K_v2 | GTGAGTTATTTTACGGTACATTAAAGGCACACCAGAATGGAAAAAAGCGATTTCCCCAAA | 14 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.124 | 1.664 | 1.354 | 0.964 | 0.403 | 0.398 |
| Raw | 190.407 | 447.970 | 315.827 | 352.162 | 50.842 | 55.703 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52004.1 | 2326 | 6e-24 | 2143 - 2201 | 100 | 59 / 59 | plus | ABC39730 |
| MLOC | AK366653 | 2642 | 3e-22 | 2471 - 2529 | 98 | 58 / 59 | plus | ABC39730 |
| JLOC1 | JLOC1_33260.1 | 2336 | 3e-24 | 2144 - 2202 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC39730 | 450 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | ABC39730 |
| Harvest35 | U35_43255 | 450 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (450 bp)
>U35_43255 450 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGGAAATCGCTTTTTTCCATTCTGGTGTGCCTTTAATGTACC GTAAAATAACTCACAGTTTTCAAGGGCCTCTACTTATCTACTCTCCAGTTATCATCAATG ATGTTCATAAGCTAGTTGTTTGTTAGCAGTCAGCAACCAAGGGTAGAACATGGAGCAAAA GCTGGATCAAATCGGCTAGTCTATCTTTGAGAAGCTCGGCCATCTCTGGGGTACATCACA ATCAGTGGCTTTCTGGTAACCGCCATGGAAACTCAGAGGTATCTATTCCAGATTGATGCA ATTGATCGACGTATTGCAGTGCTTCTCGGCACTCTTCCCTATCATCAAAGAACTCCTTCT TATCGCCTTCCATCTGATAAGTATCATTCCCCTTTCCAGTGACAACAACAACATCGCCTT GCTCGCCCATTGCAACAGCAGCTCGCACTG
Homology of Contig U35_43255 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |