- Probe CUST_32652_PI390587928
- Source Contig U35_31299
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32652_PI390587928 | Hv_44K_v2 | CTACCCCGATGTATCTGTATCTGAAATTCTGAATAAATACAGTAACAATGATGTGTGTTG | 437 | GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.089 | 0.358 | 0.751 | 2.418 | 8.703 | 23.536 |
| Raw | 5.487 | 40.598 | 72.728 | 360.911 | 444.679 | 1324.268 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70721.1 | 676 | 2e-24 | 537 - 596 | 100 | 60 / 60 | plus | ABC06042 ABC06043 |
| JLOC1 | JLOC1_46946.1 | 823 | 8e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31463 | 500 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31299 | 500 | 3e-25 | 438 - 497 | 100 | 60 / 60 | plus |
Contig Sequence (500 bp)
>U35_31299 500 Hv_44K_v2 CTTGCACACACGCCACTGCTGCTAGTCGATCAGTCTGTTTCTCCCGTCCAGGTTTCAGGG GGAGGCGCCATGAAGTACTTGGGGCAGCTGGTGGTGGCGCTCCTGGCCTTCTCGGCGGTG GTGCTGATGATGGCGCCGGCGGGCGCGGACGCGGCGACCTGCAACGCGCTGCAGCTGACC CCGTGCGCGGGGGCAATCATCGGGAACGCGGCGCCCACGGCGTCGTGCTGCAGCAAGATG AGGGAGCAGAGGCCGTGCATGTGCCAGTACGCGCGCGACCCCAACCTGAAGCAGTACGTC AACTCCCCCAACGGCAAGAAGGTCCTGGCTGCCTGCAAGGTGCCCGTGCCATCCTGTTAA ATCGACGTATATGGTCAGAGATGAGAGAGCAGAGCTGCATGTGTTCATGTGTGAGTGTGT TTGGTTGCCGTGTGTAGCTACCCCGATGTATCTGTATCTGAAATTCTGAATAAATACAGT AACAATGATGTGTGTTGTTT
Homology of Contig U35_31299 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |