barSeed - Barley Seed Development Database

Probe CUST_32648_PI390587928

Source Contig U35_43278

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32648_PI390587928	Hv_44K_v2	TACTTCGACCGGATCCAGGACGCGCTCTTCAACCAGTACGTCATCGACACGCTCTCCGGC	286	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359456	2949	2e-24	1400 - 1459	100	60 / 60	plus	ABC09205
MLOC	MLOC_21779.3	1222	2e-24	445 - 504	100	60 / 60	minus	None
JLOC1	JLOC1_15101.2	3048	8e-25	968 - 1027	100	60 / 60	plus
JLOC1	JLOC1_15101.1	3018	8e-25	955 - 1014	100	60 / 60	plus
Harvest21	ABC39775	404	3e-25	287 - 346	100	60 / 60	plus
Harvest35	U35_43278	404	3e-25	287 - 346	100	60 / 60	plus

Contig Sequence (404 bp)

>U35_43278 404 Hv_44K_v2
CAGCTCCGGCTGGGCCATCCGGATCGCCGTCTTGTGCGTGGAGCGCAACTTCGTGCTGCG
CAAGCGCGTGCTCTACTTCGTCTACGGCGTGCGCGGCGCCGCGCAGAACGCGCTCTGGCT
CGGCATGGTGCTCGCCTCGTGGCACTTCCTCTTCGTGGAGCACGTCCGCACGCCGGTGCT
GCCCTACGTCACCAAGGTGCTGCTCTGCTTCCTCGCCGCCACGCTCGTCCGGCTCGTGAA
GACGCTCCTCCTCAAGGTGCTCGCCTCCTCCTTCCATGTCTCCACCTACTTCGACCGGAT
CCAGGACGCGCTCTTCAACCAGTACGTCATCGACACGCTCTCCGGCCCGCAGCTCGTCGA
CGAGGACTACGTGATCGCAGAGGTGCGCGAGCTCCAGCGCGCCG

Homology of Contig U35_43278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g44770.1	975	2e-51	protein\|uncharacterized mscS family protein, putative, expressed
Brachypodium v1_2	Bradi3g51250.1	960	5e-59
Arabidopsis v10	None