barSeed - Barley Seed Development Database

Probe CUST_32644_PI390587928

Source Contig U35_43285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32644_PI390587928	Hv_44K_v2	GCAAGGAAAATATCAAGCTTCATAATTTTCTCATTCGGTCGATCCTCGGCAATGCTTCCT	459	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.296	0.307	0.908	2.247	1.262	1.602
Raw	4.364	7.155	23.145	90.994	18.681	25.166

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75362.2	2149	2e-24	1520 - 1579	100	60 / 60	minus	None
MLOC	MLOC_75362.1	1625	2e-24	935 - 994	100	60 / 60	minus	None
MLOC	MLOC_75362.3	2024	2e-24	1334 - 1393	100	60 / 60	minus	None
JLOC1	JLOC1_50271.3	1819	8e-25	555 - 614	100	60 / 60	plus
JLOC1	JLOC1_50271.2	1596	8e-25	595 - 654	100	60 / 60	plus
JLOC1	JLOC1_50271.1	1519	8e-25	555 - 614	100	60 / 60	plus
Harvest21	ABC39789	519	3e-25	460 - 519	100	60 / 60	plus
Harvest35	U35_43285	519	3e-25	460 - 519	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_43285 519 Hv_44K_v2
GGATCCCCCGGGCTGCAGGCAGCGGCCGCCGCAAAGCAGCTCCCGTTCCATCCCGCCGTC
TCAATCCCCCGATTCCTTCCTCGCGGCAGCTGCTCGATCCCGCCGATTCGAGGTGGGGGC
TCTTCCGACCTTGTGTAATTATTACCATTTGGGAAGAGTTAGGCGGCGGTTAGCGAAGAC
GCTCGGTGTTCGTCCGTTGTCTAGGGTTTGCTCTCCGTGAAGCTGTTTGATTGGGTTTCT
TCAGGGGTTGCCTGCATTTCTGTTGGTTGGGTTGGAGGCGGTGAGCCAAGATGCAGACTC
GTCAGAAATTCGCTCGCGTCGACACCCAGGAGCTGAAGTCCCGGATCACCAAGAAGCTCG
GCCATCAGCGAGCCGAGCATTACTTCAACAGCCTCAGGAAATTCCTGAGCTTTAAGCTCA
ACAAGGATGACTTTGACAAGATTTGCTTCGGTGTATTGGGCAAGGAAAATATCAAGCTTC
ATAATTTTCTCATTCGGTCGATCCTCGGCAATGCTTCCT

Homology of Contig U35_43285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None