barSeed - Barley Seed Development Database

Probe CUST_32639_PI390587928

Source Contig U35_43292

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32639_PI390587928	Hv_44K_v2	ACTTGGAGCTTGTGCTCGCTCCATCTGTTGCTATTGAAATTCCACCTGTAGTTGCTGAAT	379	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14121.1	4805	2e-24	298 - 357	100	60 / 60	plus	ABC13047
JLOC1	JLOC1_9624.1	4957	8e-25	301 - 360	100	60 / 60	plus
Harvest21	ABC39801	445	3e-25	380 - 439	100	60 / 60	plus
Harvest35	U35_43292	445	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_43292 445 Hv_44K_v2
TGGCTTCCTTCCGTTCCCCGGCCGCCTCCGGCGACCCCACCCCCGCCACGCGCCGGCCGG
CCGCCCCGGACTCGCGCTCGCCGAGGGAGGGGCGGGATGGGGCTGCTTCGGGGGTTCTCG
GTGGGGGCCGTGATGAAGCGGATGTGCAAGGCGGTGCTGAAGAAGGGGCTCGGGGATCTG
TTCCTCGGCGAGCTCGACCTCGACCAGCTCGACCTGCAGCTCACCCGCGGCACGCTCGAG
CTCACCGACCTCGCGCTCAACGCCGACTACATCAACAGCCAGCTATCAGGATTATCTATC
ATGGTGAAAGAAGGATCAATAAAATCTCTGCTGGTTAAATTTCCTCTACAGTTAAAGAGT
TGTGAGATTGTAGTGGAAGACTTGGAGCTTGTGCTCGCTCCATCTGTTGCTATTGAAATT
CCACCTGTAGTTGCTGAATGCTCTG

Homology of Contig U35_43292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None