barSeed - Barley Seed Development Database

Probe CUST_32634_PI390587928

Source Contig U35_17552

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32634_PI390587928	Hv_44K_v2	TTAATGAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGCAGAAGCTCGAGTCCCAGC	1278	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20533.1	2237	2e-24	1083 - 1142	100	60 / 60	minus	ABC08398
MLOC	MLOC_20533.2	1606	2e-24	622 - 681	100	60 / 60	minus	ABC08398
JLOC1	JLOC1_14232.1	2030	8e-25	818 - 877	100	60 / 60	minus
Harvest21	ABC08398	1548	3e-25	756 - 815	100	60 / 60	plus	ABC08398
Harvest35	U35_17553	1364	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_17552	1431	3e-25	1279 - 1338	100	60 / 60	plus

Contig Sequence (1431 bp)

>U35_17552 1431 Hv_44K_v2
CGCAACCCTAACCCACCCAGCCCCTCGCGCCGCCACCTCCCTCCGGATCCACACGCGCCG
CTGCCGCCGCGATCATGGGCTTCGACGTGGGCGTCGTCCCCTTCAACCCCGATGGCTGGG
GCCCTCCCGACGCGCCGGGCGCGGCGCCGCTCCTGGGCGGGGCCGTCGCCACGGCCTCCA
TCCCCTTCGCGCCCTTCTCCCGCTCCGACAAGCTGGGCCGCATCGCCGACTGGACGCGCA
ACCCGGGCCACCCTGGCGCGCACGGCCACCACGCGGCCGCCGCGTCCCGCGACTCGGTCT
TCGACTTCTCGTCCGCCGACGACTCGCTCGCCGCCGCCGCCGAGGACTCGTCCTTCAGCC
TCGTGGACGCCAAGCCGCCGCCCAAGCACCCGCGCTTCGGCCCCAAGTGGCGCTTCAACC
AGCGCCCCCAGCTGCCCCAGCGCCGCGACGAGGAGGTCGAGGCCAAGCGCCGCGAGGCCG
AGAAGGAGCGCGCCCGCCGCGAGCGCCACTACCAGAACCACCGTTCCCACCACCACCAGG
GCTTCCGCGGCAACCAGCAGTCCTCGGCCAAGCCCTCGGTCGACATCCAGCCCGACTGGA
CCATCCTCGAGCAGATCCCCTTCGCCAACTTCACCAAGCTCTCCTTCGCCGTCAACGACC
AGCCCGAGGACCTCCTCGTCTGCGGCGCCGTCGACTCGTACGACCGCGCCTACGACCGCG
TCAACCCCAAGACGGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCAAGATCA
CCACCACCGACGACCCCATCATCCGCCGCCTCGCCGAGGAGGACAAGGCCACCGTCTTCG
CCACCGACGCCATCCTCGCCGCCCTCATGTGCACGCCCCGCAGCATCCTCTCCTGGGACA
TTGTCGTGCAGCGCGTCGGCAACAAGCTCTTCTTCGACAAGCGTGAGGGCTCTCAGCTCG
ATCTGCTCACTGTCAACGAGACTGCGCAGGAGCAGCTCCCTGAGAACAAGGATGACATCA
ACTCGGCACCGGCCCTTGCCGTCGAGGCCACCTACATCAACCAGAACTTCTCGCAGCAGG
TGCTGGTACGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAACCCGTTTGCCTCTGAGA
ATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGATGATGATATTA
GCATCATTGCTCGCTGTGAAGTGCATGCTGCTGGTGTTGATCCGAGTGGTGCTCGCCAGT
TCCTCACTCTTAATGCACTTAATGAGTTTGATCCTAAGATTACTGGTGTTGACTGGAAGC
AGAAGCTCGAGTCCCAGCGTGGTGCCGTGCTTGCTACAGAGCTCAAGAACAATGCCAACA
AGCTCGCTCGCTGGACTGCCCAGGCTTTACTATCTGGCGCGGACATGATGA

Homology of Contig U35_17552 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49150.1	586	0.0	protein\|eukaryotic translation initiation factor 3 subunit D, putative, expressed
Brachypodium v1_2	Bradi2g16320.1	584	0.0
Arabidopsis v10	AT4G20980.1	591	3e-168	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) \| chr4:11216997-11218772 FORWARD LENGTH=591