barSeed - Barley Seed Development Database

Probe CUST_32632_PI390587928

Source Contig U35_17553

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32632_PI390587928	Hv_44K_v2	TTGTGCTTGGATGTGCTAAGCTTAGCACGCACTGCTTTGGATTAATGACTATGCTGGTAG	1273	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.267	1.177	1.186	0.962	0.438	0.384
Raw	13410.667	19331.783	17222.367	21720.713	3495.980	3346.597

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20533.1	2237	2e-24	374 - 433	100	60 / 60	minus	ABC08398
JLOC1	JLOC1_14232.1	2030	8e-25	109 - 168	100	60 / 60	minus
Harvest21	ABC08398	1548	3e-25	1465 - 1524	100	60 / 60	plus	ABC08398
Harvest35	U35_17553	1364	3e-25	1274 - 1333	100	60 / 60	plus

Contig Sequence (1364 bp)

>U35_17553 1364 Hv_44K_v2
GACCGCGTCAACCCCAGACGGCCCGCCGCCTCGAGCGCTTCAAGAACCGCCAGTTCTTCA
AGATCACCACCACCGACGACCCCATCATCCGCCGCCTCGCCGAGGAGGACAAGGCCACCG
TCTTCGCCACCGACGCCATCCTCGCCGCCCTCATGTGCACGCCCCGCAGCATCCTCTCCT
GGGACATTGTCGTGCAGCGGGTCGGCAACAAGCTCTTCTTCGACAAGCGCGAGGGCTCTC
AGCTCGATCTGCTCACTGTCAACGAGACTGCGCAGGAGCAGCTCCCTGAGAACAAGGATG
ACATCAACTCGGCGCCGGCTCTTGCTGTTGAGGCCACCTACATCAACCAGAACTTCTCGC
AGCAGGTGCTGGTACGTGATGGCGAGAAGGTTACCTTTGATGAGCCTAACCCGTTTGCCT
CTGAGAATGAGGAGGCGGCGCCTGTTTGCTACCGTTATCGCCGCTGGAAGCTGGATGATG
ATATTAGCATCATTGCTCGCTGTGAAGTGCATGCTGCTGGTGTTGATCCGAGTGGTGCTC
GCCAGTTCCTCACTCTTAATGCACTTAATGAGTTTGATCCTAAGATTACTGGTGTTGACT
GGAAGCAGAAGCTCGAGTCCCAGCGCGGTGCCGTGCTTGCTACAGAGCTCAAGAACAATG
CCAACAAGCTCGCTCGCTGGACTGCCCAGGCTTTACTATCTGGCGCGGACATGATGAAGT
TGGGTTATGTGTCTCGTGTGCACCCCCGCGACCACTTCAACCACTCCATACTCACTGTCA
TGGGCTACAAGCCAAGAGATTTTGCTACCCAGATCAACCTCAACACTGCAAACATGTGGG
GAATTGTCAAGTCGATTGTGGACATATGCATGAAGTTTGAAGAGGGCAAGTATGTGCTTG
TGAAAGATCCTGCCAAGCCACAGATGAGGATCTATCAGGTTCCTAATGATGCGTTTGAGA
ACGATTATGTTGAAGAGCCACTTCCAGAGGAGGAGCAGGTTCGCCCGGCTACAGATGATG
TCGATGCTACTGCACAGGAGATGGATGCTGCTGCTGAGGCAGAGGCTAATAAAGCAACTA
CCCAGGGTGGTGACGGTGAGAAGACTGCAGATGCTGCCGCTGCTTGAAGGGTATAATGGG
TCATCTTGCTTTTATCTAGATAATGTGTCTTTTCTGTTTTATGATCTGTTTTTGTGGATT
AAAGAGTTGATCTGCCTTGTCTTGATACAGTGGTCTTATTTTGGTCCATGAGAAAACTTG
TTACTCTTAAATTTTGTGCTTGGATGTGCTAAGCTTAGCACGCACTGCTTTGGATTAATG
ACTATGCTGGTAGTTGAATATTTATTCTATTAAAAAAAAAAAAA

Homology of Contig U35_17553 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os05g49150.1	586	protein\|eukaryotic translation initiation factor 3 subunit D, putative, expressed
Brachypodium v1_2	Bradi2g16320.1	584
Arabidopsis v10	AT4G20980.1	591	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) \| chr4:11216997-11218772 FORWARD LENGTH=591