- Probe CUST_32615_PI390587928
- Source Contig U35_43825
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32615_PI390587928 | Hv_44K_v2 | TAGTAGTATGTAGTAACCCGGATTTGCCATGAGGGGGAGTTTTTTGTTTTACAGTTTTTT | 81 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.794 | 2.602 | 0.979 | 0.600 | 0.942 | 0.851 |
| Raw | 13.543 | 28.544 | 10.274 | 8.024 | 3.174 | 4.238 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_70809.1 | 1520 | 9e-22 | 99 - 156 | 98 | 57 / 58 | minus | ABC40958 |
| MLOC | MLOC_70809.2 | 2538 | 9e-22 | 95 - 152 | 98 | 57 / 58 | minus | ABC40958 |
| MLOC | MLOC_70809.3 | 2416 | 9e-22 | 95 - 152 | 98 | 57 / 58 | minus | ABC40958 |
| JLOC1 | JLOC1_47007.1 | 1830 | 5e-22 | 1506 - 1563 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC40958 | 274 | 3e-25 | 82 - 141 | 100 | 60 / 60 | minus | ABC40958 |
| Harvest21 | ABC51640 | 375 | 2e-22 | 223 - 280 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_43825 | 274 | 3e-25 | 82 - 141 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_49746 | 375 | 2e-22 | 223 - 280 | 98 | 57 / 58 | plus |
Contig Sequence (274 bp)
>U35_43825 274 Hv_44K_v2 TTTATTACATAATTTGGGCCTCCAAAAAAAGGAACCCAATTTTTTCTGGCTTAAATAACG GCCGCCGACCAAAAAAAGGAAAAAAAACTGTAAAACAAAAAACTCCCCCTCATGGCAAAT CCGGGTTACTACATACTACTACTTTCGAGCTTGTTCGCTTATTACCCTAAACATGTGATC ACCCTCCTTTTTTCCTTTCCCTTTTCCTCCCTTTTTTTTTTTTCCGTACCCCCTGATCGA CCGATTTCCTTAATAACCGAAAACAATTAGATCC
Homology of Contig U35_43825 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |