barSeed - Barley Seed Development Database

Probe CUST_32605_PI390587928

Source Contig U35_31852

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32605_PI390587928	Hv_44K_v2	TTAGCTAGGCCAAGCTTGCCAACCTGCCGCCGATCATAGGCCTATATTCGAGCTTCGTGC	453	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68623.1	2569	7e-23	455 - 514	98	59 / 60	plus	ABC07074
MLOC	MLOC_68623.2	2405	7e-23	1738 - 1797	98	59 / 60	minus	ABC07074
MLOC	MLOC_68623.3	2414	7e-23	1790 - 1849	98	59 / 60	minus	ABC07074
JLOC1	JLOC1_45414.1	5548	4e-23	565 - 624	98	59 / 60	plus
Harvest21	ABC07074	2020	1e-23	119 - 178	98	59 / 60	plus	ABC07074
Harvest35	U35_31852	606	3e-25	454 - 513	100	60 / 60	plus
Harvest35	U35_2940	2335	1e-23	427 - 486	98	59 / 60	plus

Contig Sequence (606 bp)

>U35_31852 606 Hv_44K_v2
AGTGGCCTGATCACTTCAGCCTGTAGCTAGCAACCTCTCTCTCTCTCTCTCTCTTGCCAC
AATAATTCCGCATGGTGGGGATGAGCGGCGCCTACGGCGGCCACCACGGCAATGGCGGCG
AGGGCCGGGCGGCTCCCAAGCAGGCCGTGGTAGTCGGTGCGCCACCACCGCCGGCAGCGG
CCGAGATGGAGATGGAGATTGGGGTGGTGCACAAGGTGGCGGCGCAGCCGGCGCAGAGCA
CGGCGAGCAAGATGAAGGGGAAGGTGAAGGAGACCTTCTTCCCCGACGACCCGTTCCGGA
GCTTCAAGGGGCAGCCGGTGCGGGCGCAGTGGGTGCTGGCGGCCAAGTACCTGTTCCCCG
TGCTGGAGTGGGTGCCCGGCTACTCCCTCTCCCTCTTCAAGTCCGACCTCGTCGCCGGCC
TCACCATTGCCAGCCTCGCCATCCCCCAGGGTATTAGCTAGGCCAAGCTTGCCAACCTGC
CGCCGATCATAGGCCTATATTCGAGCTTCGTGCCGCCGCTGGTGTACGCGGTGCTGGGGA
GCTCGAGGGACCTGGCGGTGGGGCCGGTGTCGATCGCGTCGCTGATCATGGGGTCGATGC
TGCGGC

Homology of Contig U35_31852 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55800.1	662	9e-71	protein\|sulfate transporter, putative, expressed
Brachypodium v1_2	Bradi5g24170.2	607	2e-77
Arabidopsis v10	AT1G23090.1	631	2e-62	\| Symbols: AST91, SULTR3;3 \| sulfate transporter 91 \| chr1:8185238-8188954 REVERSE LENGTH=631