barSeed - Barley Seed Development Database

Probe CUST_32604_PI390587928

Source Contig U35_31853

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32604_PI390587928	Hv_44K_v2	CAGCATAGATGCAGTTGATGCAGATATGAATGAGTCAGGGGATATGGTAGAGGGAAAACA	446	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.275	1.557	1.135	0.686	0.418	0.423
Raw	1685.880	1595.157	1141.037	1000.337	234.479	254.792

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63540.3	4481	2e-24	2828 - 2887	100	60 / 60	plus	ABC18411 ABC40085
MLOC	MLOC_63540.2	3191	2e-24	1598 - 1657	100	60 / 60	minus	ABC18411 ABC40085
MLOC	MLOC_63540.1	3169	2e-24	1638 - 1697	100	60 / 60	minus	ABC18411 ABC40085
JLOC1	JLOC1_41629.1	3141	8e-25	1467 - 1526	100	60 / 60	plus
Harvest35	U35_31853	599	3e-25	447 - 506	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_31853 599 Hv_44K_v2
TTTGATCGTATACTGTGTGATGTGCCCTGTAGTGGTGATGGAACTGTCCGTAAGGCTCCT
GGTATGTGGAGAACATGGAATATTGGCATGGGTAATGGACTTCATCGTCTCCAAGTGGAA
ATAGCTATGCGTGGCATTGCATTGCTTAAAGTGGGCGGAAGGATGGTCTACTCAACATGC
TCAATGAATCCTGTTGAAAATGAAGCTGTTGTTGGTGAGATTCTGCGGAGATGTGGGGAT
TCTGTTGAACTCCTTGATGTTTCTAATGAGCTACCTGAATTGATCCGCCGTCCTGGACTT
AGGACCTGGAAGGTACGGGATAGAGCGTCTTGGTTGGGCAGTCATAAAGATGTACTTCAC
TACAGGAAGAATGTGATATTGCCAAGTATGTTCCCCTCGGGTAAAGGTAGCATGGATAGC
TGTACGGCGGGTGGCAGTGTTGAGGTCAGCATAGATGCAGTTGATGCAGATATGAATGAG
TCAGGGGATATGGTAGAGGGAAAACAAGAAACGAAAATAGCAATTGATGACAGCAAGAAC
GGCGACNATGCCAATACTGAAAGAGATAAAACAGGTGAATCTGAGTCTGTTAAACTTTC

Homology of Contig U35_31853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29630.1	881	5e-101	protein\|NOL1/NOP2/sun family protein, putative, expressed
Brachypodium v1_2	Bradi4g32840.1	881	1e-100
Arabidopsis v10	AT2G22400.1	808	1e-69	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr2:9504823-9508788 REVERSE LENGTH=808