- Probe CUST_32602_PI390587928
- Source Contig U35_31854
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32602_PI390587928 | Hv_44K_v2 | GAGTGATCAAATTGCCGATGCGGTCACTGAACTTATCCCTGTTCTGAACATAAAGCAGCT | 557 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.572 | 0.590 | 1.822 | 3.894 | 1.396 | 0.884 |
| Raw | 2.648 | 5.113 | 22.556 | 69.061 | 8.593 | 6.249 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15586.5 | 1106 | 2e-24 | 428 - 487 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15586.2 | 1225 | 2e-24 | 574 - 633 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15586.3 | 1257 | 2e-24 | 574 - 633 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15586.1 | 1239 | 2e-24 | 589 - 648 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_15586.4 | 2821 | 2e-24 | 656 - 715 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_10702.2 | 1257 | 8e-25 | 593 - 652 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10702.1 | 832 | 8e-25 | 168 - 227 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_31854 | 617 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus |
Contig Sequence (617 bp)
>U35_31854 617 Hv_44K_v2 CTCCCTTCTCTCCATTGCTCCATCTCACGCCCACCACGAGCTAGCTACTACTACTGTCCC ATCAGGGAGGCCGGCCAGGAAGATCGAGGCATGGCCGAGGCCGTCCGGGACGACCATCGC GGCGTGGTCGACATCGTCGAGGACGACGACACCGGCCTGCACCCGAGCAATCACGGCGAC AGCACGTGGGAGATAGAGGAGCTGGAGCCGGAAGACCGGACGGCCGGGCCGCCTCCTCGC CTTTCTCCCCGGGCAGCGGCCACCTCCGACGCCGACGACGTGTACGTGGCGGTGGGCAAG GGCGGGTCCAGCATGGCGGCGCTGTCGTGGGCGCTGCGGCGGCTCGCGAGGCCGCGGAGC TTCGTCTACCTTGTGCACGTCTTCCCCGTCGTCGCCACCATCCCCACCCCATTAGGAATG ATGCCTAAGAGACAAGCAACGCCAGAGCAGGTAGAAACTTACATGAACCAAGAGAGATCC AAGAGGCGAGAGATGCTGCAAAAATTTCTGGACCACTGTCGCAACTTTCAGGTTAATGTC GATGTGTACCTCATCGAGAGTGATCAAATTGCCGATGCGGTCACTGAACTTATCCCTGTT CTGAACATAAAGCAGCT
Homology of Contig U35_31854 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g18820.1 | 291 | 2e-56 | protein|serine threonine kinase, putative, expressed |
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |