barSeed - Barley Seed Development Database

Probe CUST_325_PI415269222

Source Contig TA55316_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_325_PI415269222	Hv_44K_v2	CCTAACTTTTGCCTCCTTTTGACACATATTGTTTTGTGTAATTCAGAATAATGCTACTCC	433	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356959	1664	2e-24	1547 - 1606	100	60 / 60	plus	ABC03769
MLOC	MLOC_73340.1	2428	2e-24	865 - 924	100	60 / 60	plus	ABC03769
JLOC1	JLOC1_48828.1	2080	8e-25	1521 - 1580	100	60 / 60	minus
JLOC1	JLOC1_48827.1	1423	8e-25	740 - 799	100	60 / 60	plus
Harvest21	ABC03769	1867	3e-25	1382 - 1441	100	60 / 60	minus	ABC03769
Harvest35	U35_10307	564	3e-25	435 - 494	100	60 / 60	plus

Contig Sequence (518 bp)

>TA55316_4513 518 Hv_44K_v2
CACGCGTCCGGGGGACACGGCGAGTGGTGCGTGGCGAAGCCGTCGGTGCCGGCAGCGATC
GTGCAGCAGGCCATGGACTACGCGTGCGCGTCGGGCGCCGACTGCGAGTCCCTCCAGGCC
GATGGCGCCTGCTTCAAGCCGGACACCATGACGTCCCACGCCTCCTACGCCTTCAACAGC
TACTGGCAGCGCGCCAAGTCCACCGGCGCCACCTGCGACTTCGGCGGCACCGCCATGCTC
ATCACCAAGGACCCAAGCTATGATAACTGCCATTACAGTGTGATGTGAAGACCAGATCTA
GATGCCATCAGTGGTTTTGGAAGCTGGACGCCATTTTCTGCTCAAGTTCGGAGGAAGTAG
TGCAGACATATATACTTGTAGGCTGTGTTCTGAGTGTGACCATGTTCATTTTGTGTATGT
ATGTACGTAGCCACCTAACTTTTGCCTCCTTTTGACACATATTGTTTTGTGTAATTCAGA
ATAATGCTACTCCTATGTAACTTTCCATCTTGAATTTC

Homology of Contig TA55316_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None